CCR4-NOT transcription complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420 |
| fragaria_vesca | FvH4_2g22602 |
| malus_domestica | MD17G1220100.v1.1 |
| prunus_persica | Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1 |
| pyrus_communis | pycom17g22500 |
| rosa_laevigata | RLG00000012284 RLG00000019337 |
| rosa_multiflora | Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760 |
| rosa_rugosa | Rorug02G0312000 Rorug06G0205600 Rorug06G0205600 |
| rosa_samantha | Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500 |
| rosa_wichuraiana | Rw2G029720 Rw6G027350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 170, 200 |
| AcuI | CTGAAG | 1 cut(s) | 26 |
| AfaI | GTAC | 1 cut(s) | 221 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 116 |
| AjnI | CCWGG | 1 cut(s) | 191 |
| AluBI | AGCT | 2 cut(s) | 94, 179 |
| AluI | AGCT | 2 cut(s) | 94, 179 |
| Alw26I | GTCTC | 2 cut(s) | 124, 146 |
| ApeKI | GCWGC | 3 cut(s) | 176, 197, 209 |
| AsuHPI | GGTGA | 2 cut(s) | 77, 214 |
| BbvCI | CCTCAGC | 1 cut(s) | 180 |
| BbvI | GCAGC | 3 cut(s) | 184, 188, 221 |
| BccI | CCATC | 1 cut(s) | 136 |
| BciT130I | CCWGG | 1 cut(s) | 193 |
| BcoDI | GTCTC | 2 cut(s) | 124, 146 |
| BfaI | CTAG | 1 cut(s) | 223 |
| BisI | GCNGC | 3 cut(s) | 177, 198, 210 |
| BlsI | GCNGC | 3 cut(s) | 178, 199, 211 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 116 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BmsI | GCATC | 1 cut(s) | 55 |
| Bpu10I | CCTNAGC | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 1 cut(s) | 192 |
| BseBI | CCWGG | 1 cut(s) | 193 |
| BseDI | CCNNGG | 1 cut(s) | 192 |
| BseGI | GGATG | 1 cut(s) | 109 |
| BseMII | CTCAG | 2 cut(s) | 113, 171 |
| BseRI | GAGGAG | 2 cut(s) | 164, 197 |
| BseXI | GCAGC | 3 cut(s) | 184, 188, 221 |
| BsmAI | GTCTC | 2 cut(s) | 124, 146 |
| Bsp143I | GATC | 1 cut(s) | 38 |
| BspACI | CCGC | 2 cut(s) | 170, 200 |
| BspCNI | CTCAG | 2 cut(s) | 112, 172 |
| BssECI | CCNNGG | 1 cut(s) | 192 |
| BssMI | GATC | 1 cut(s) | 38 |
| Bst2UI | CCWGG | 1 cut(s) | 193 |
| Bst4CI | ACNGT | 1 cut(s) | 114 |
| BstDEI | CTNAG | 2 cut(s) | 99, 180 |
| BstF5I | GGATG | 1 cut(s) | 109 |
| BstKTI | GATC | 1 cut(s) | 41 |
| BstMAI | GTCTC | 2 cut(s) | 124, 146 |
| BstMBI | GATC | 1 cut(s) | 38 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 176, 185, 194, 206 |
| BstNI | CCWGG | 1 cut(s) | 193 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstV1I | GCAGC | 3 cut(s) | 184, 188, 221 |
| BtsCI | GGATG | 1 cut(s) | 109 |
| Csp6I | GTAC | 1 cut(s) | 220 |
| CviJI | RGCY | 5 cut(s) | 57, 94, 179, 188, 197 |
| CviKI_1 | RGCY | 5 cut(s) | 57, 94, 179, 188, 197 |
| CviQI | GTAC | 1 cut(s) | 220 |
| DdeI | CTNAG | 2 cut(s) | 99, 180 |
| DpnI | GATC | 1 cut(s) | 40 |
| DpnII | GATC | 1 cut(s) | 38 |
| DriI | GACNNNNNGTC | 1 cut(s) | 116 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 116 |
| Eco57I | CTGAAG | 1 cut(s) | 26 |
| EcoRII | CCWGG | 1 cut(s) | 191 |
| Fnu4HI | GCNGC | 3 cut(s) | 177, 198, 210 |
| FokI | GGATG | 1 cut(s) | 116 |
| Fsp4HI | GCNGC | 3 cut(s) | 177, 198, 210 |
| FspBI | CTAG | 1 cut(s) | 223 |
| GluI | GCNGC | 3 cut(s) | 177, 198, 210 |
| HinfI | GANTC | 3 cut(s) | 34, 77, 97 |
| HphI | GGTGA | 2 cut(s) | 77, 214 |
| Hpy166II | GTNNAC | 1 cut(s) | 85 |
| Hpy188I | TCNGA | 1 cut(s) | 76 |
| Hpy188III | TCNNGA | 1 cut(s) | 101 |
| Hpy8I | GTNNAC | 1 cut(s) | 85 |
| HpyAV | CCTTC | 1 cut(s) | 101 |
| HpyCH4III | ACNGT | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 1 cut(s) | 52 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 176, 185, 194, 206 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 180 |
| Kzo9I | GATC | 1 cut(s) | 38 |
| LpnPI | CCDG | 5 cut(s) | 44, 62, 86, 178, 205 |
| Lsp1109I | GCAGC | 3 cut(s) | 184, 188, 221 |
| LweI | GCATC | 1 cut(s) | 55 |
| MaeI | CTAG | 1 cut(s) | 223 |
| MaeIII | GTNAC | 1 cut(s) | 202 |
| MalI | GATC | 1 cut(s) | 40 |
| MboI | GATC | 1 cut(s) | 38 |
| MluCI | AATT | 1 cut(s) | 124 |
| MlyI | GAGTC | 2 cut(s) | 71, 91 |
| MnlI | CCTC | 5 cut(s) | 56, 68, 142, 175, 178 |
| MspA1I | CMGCKG | 1 cut(s) | 179 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MvaI | CCWGG | 1 cut(s) | 193 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 176, 185, 194, 206 |
| NdeII | GATC | 1 cut(s) | 38 |
| NmuCI | GTSAC | 1 cut(s) | 202 |
| PfeI | GAWTC | 1 cut(s) | 34 |
| PkrI | GCNGC | 3 cut(s) | 178, 199, 211 |
| PleI | GAGTC | 2 cut(s) | 71, 91 |
| PpsI | GAGTC | 2 cut(s) | 71, 91 |
| Psp6I | CCWGG | 1 cut(s) | 191 |
| PspGI | CCWGG | 1 cut(s) | 191 |
| PvuII | CAGCTG | 1 cut(s) | 179 |
| RsaI | GTAC | 1 cut(s) | 221 |
| RsaNI | GTAC | 1 cut(s) | 220 |
| SatI | GCNGC | 3 cut(s) | 177, 198, 210 |
| Sau3AI | GATC | 1 cut(s) | 38 |
| SchI | GAGTC | 2 cut(s) | 71, 91 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SetI | ASST | 2 cut(s) | 96, 181 |
| SfaNI | GCATC | 1 cut(s) | 55 |
| SgeI | CNNG | 7 cut(s) | 43, 61, 85, 101, 113, 204, 205 |
| Sse9I | AATT | 1 cut(s) | 124 |
| SsiI | CCGC | 2 cut(s) | 170, 200 |
| SspMI | CTAG | 1 cut(s) | 223 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| TaaI | ACNGT | 1 cut(s) | 114 |
| TaqI | TCGA | 1 cut(s) | 37 |
| TasI | AATT | 1 cut(s) | 124 |
| TfiI | GAWTC | 1 cut(s) | 34 |
| TseFI | GTSAC | 1 cut(s) | 202 |
| TseI | GCWGC | 3 cut(s) | 176, 197, 209 |
| Tsp45I | GTSAC | 1 cut(s) | 202 |
| TspDTI | ATGAA | 1 cut(s) | 120 |
| XspI | CTAG | 1 cut(s) | 223 |