Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Reverse (-)

48170564 .. 48172143

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTATAAGTACTGTTTGGGTTGGTTAGTTTCTTTGTTCTGGCCATATGGTTGGTTACTTTCACCCCACAATTTCTGTAAGCATGCGCCAGTTGCACCTACTTCTCACTTAGATCAGCCAGTCTCAGTCACACAAGACATCAGAGGAGGACCCATAAAAAGCTCGAGTTCAGATGAACTTGTCATGCGGAAGCATTCCACTCAAGTTGAGCTAGACATGCCCATTTTGAGGCCTGCCCCAAATGTTGCAAATATGCCTCAGCCTGCCCCAAATGTTACAAATATGCTCAATTTGAAGCCTGCCCCAAATGTTGCAAATCCAAATCCCTCTAAACGAACAGAGCTGTTAGAATCAAATTTTATAGACCCGACTGAGCCAAATAAAAGTTTGAAGCAGGTTGAAGATGCTTCTTTTGGTTCCATAAGGGTTTCATCAAATGATAAAATTGAGGCTAATGGAGGCACCCAAAAAAAGAAACCAGCAAAATCACATCTGCTTGAGATTTGCACTAAACAAAAATGGGAGCCTCCAGTTTTTGAGTGCTGCAAGGAGGAAGGGCCAAGCCACAGGAGAATGTTCACCTTCAAGGTTAATGTTAAAGTGAATGATCCCAATACAGATCTCGAATGCTTTAGTTCTCCTCATCCGAAAAAGAAAGCTGCAGCCGAGCAAGCATCTGAAGGGGCACTGTGGTACTTAAAGCATCTTGGTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

239

Amino Acids

26.76

Weight (kDa)

8.81

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	161 - 234	9.3e-16	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	161 - 230	3.4e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	461
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	2 cut(s)	11, 695
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	4 cut(s)	295, 391, 401, 586
AluBI	AGCT	4 cut(s)	162, 211, 343, 659
AluI	AGCT	4 cut(s)	162, 211, 343, 659
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	3 cut(s)	41, 230, 557
ApeKI	GCWGC	3 cut(s)	543, 659, 662
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	149, 557
AsuHPI	GGTGA	2 cut(s)	54, 571
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	461
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	530, 646, 674
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	660
BfuAI	ACCTGC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	3 cut(s)	544, 660, 663
BlsI	GCNGC	3 cut(s)	545, 661, 664
BmcAI	AGTACT	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	149, 557
BmiI	GGNNCC	4 cut(s)	151, 418, 463, 525
BmsI	GCATC	3 cut(s)	394, 683, 712
BpmI	CTGGAG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	186, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	3 cut(s)	89, 119, 530
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	138, 272, 363
BseNI	ACTGG	3 cut(s)	89, 119, 530
BseRI	GAGGAG	2 cut(s)	159, 630
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	3 cut(s)	530, 646, 674
BshFI	GGCC	3 cut(s)	43, 232, 559
BshNI	GGYRCC	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	2 cut(s)	193, 632
BsnI	GGCC	3 cut(s)	43, 232, 559
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	3 cut(s)	112, 607, 619
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	3 cut(s)	43, 232, 559
BspCNI	CTCAG	3 cut(s)	137, 271, 364
BspLI	GGNNCC	4 cut(s)	151, 418, 463, 525
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	461
BsrI	ACTGG	3 cut(s)	89, 119, 530
BssMI	GATC	3 cut(s)	112, 607, 619
Bst4CI	ACNGT	2 cut(s)	14, 690
BstC8I	GCNNGC	5 cut(s)	84, 234, 264, 300, 672
BstDEI	CTNAG	4 cut(s)	109, 124, 258, 372
BstF5I	GGATG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	3 cut(s)	115, 610, 622
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	3 cut(s)	112, 607, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 217, 671
BstNSI	RCATGY	2 cut(s)	86, 220
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	3 cut(s)	530, 646, 674
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	43, 232, 559
BtsCI	GGATG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	686
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	5 cut(s)	84, 234, 264, 300, 672
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	149, 557
Csp6I	GTAC	2 cut(s)	10, 694
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	3 cut(s)	83, 184, 217
CviQI	GTAC	2 cut(s)	10, 694
DdeI	CTNAG	4 cut(s)	109, 124, 258, 372
DpnI	GATC	3 cut(s)	114, 609, 621
DpnII	GATC	3 cut(s)	112, 607, 619
EaeI	YGGCCR	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	699
Eco88I	CYCGRG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	149
FaeI	CATG	3 cut(s)	86, 187, 220
FatI	CATG	3 cut(s)	82, 183, 216
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	544, 660, 663
FokI	GGATG	1 cut(s)	630
Fsp4HI	GCNGC	3 cut(s)	544, 660, 663
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	3 cut(s)	544, 660, 663
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	3 cut(s)	43, 232, 559
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	3 cut(s)	86, 187, 220
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	2 cut(s)	54, 571
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	4 cut(s)	143, 172, 648, 679
Hpy188III	TCNNGA	1 cut(s)	623
Hpy8I	GTNNAC	1 cut(s)	579
HpyAV	CCTTC	3 cut(s)	548, 592, 674
HpyCH4III	ACNGT	2 cut(s)	14, 690
HpyCH4V	TGCA	6 cut(s)	95, 248, 314, 507, 546, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 217, 671
HpyF3I	CTNAG	4 cut(s)	109, 124, 258, 372
Hsp92II	CATG	3 cut(s)	86, 187, 220
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	112, 607, 619
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	3 cut(s)	530, 646, 674
LweI	GCATC	3 cut(s)	394, 683, 712
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	54, 127, 274
MalI	GATC	3 cut(s)	114, 609, 621
MboI	GATC	3 cut(s)	112, 607, 619
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	688
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	4 cut(s)	70, 289, 355, 444
MluNI	TGGCCA	1 cut(s)	43
Mox20I	TGGCCA	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	3 cut(s)	591, 597, 698
Msp20I	TGGCCA	1 cut(s)	43
Mva1269I	GAATGC	2 cut(s)	193, 632
MwoI	GCNNNNNNNGC	3 cut(s)	92, 217, 671
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	3 cut(s)	112, 607, 619
NlaIII	CATG	3 cut(s)	86, 187, 220
NlaIV	GGNNCC	4 cut(s)	151, 418, 463, 525
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	2 cut(s)	86, 220
PaeI	GCATGC	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	232
PctI	GAATGC	2 cut(s)	193, 632
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	545, 661, 664
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
PspN4I	GGNNCC	4 cut(s)	151, 418, 463, 525
PspPI	GGNCC	2 cut(s)	149, 557
PspPPI	RGGWCCY	1 cut(s)	149
PspXI	VCTCGAGB	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	11, 695
RsaNI	GTAC	2 cut(s)	10, 694
SaqAI	TTAA	3 cut(s)	591, 597, 698
SatI	GCNGC	3 cut(s)	544, 660, 663
Sau3AI	GATC	3 cut(s)	112, 607, 619
Sau96I	GGNCC	2 cut(s)	149, 557
ScaI	AGTACT	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	688
SetI	ASST	8 cut(s)	100, 164, 213, 345, 399, 584, 591, 661
SfaNI	GCATC	3 cut(s)	394, 683, 712
SfcI	CTRYAG	1 cut(s)	660
Sfr274I	CTCGAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	3 cut(s)	163, 201, 497
SmoI	CTYRAG	3 cut(s)	163, 201, 497
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	4 cut(s)	70, 289, 355, 444
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	14, 690
TaqI	TCGA	2 cut(s)	164, 624
TasI	AATT	4 cut(s)	70, 289, 355, 444
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	3 cut(s)	591, 597, 698
Tru9I	TTAA	3 cut(s)	591, 597, 698
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	543, 659, 662
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	189, 420
TspRI	CASTG	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	2 cut(s)	86, 220
XhoI	CTCGAG	1 cut(s)	163
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.