Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Reverse (-)

50517465 .. 50518859

Gene Structure 1395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019337

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCGGAAGCATTCCACTCAAGTTGAGCTAGACATGCCCATTTTAAGGCCTGCCTTAAATGTTGCAAATATGCCTCAGCCTGCCCCAAATGTTACAAATATGCTCAATTTGAAGCCTGCCCCAAATGTTGCAAATCCAAATCCCTCTAAACGAACTGAGCTGTTAGAATCAAATTTTATAGACCCTACTGAGCCAAATAAAAGTTTGAAGGTTGAAGATGCTTCTTTTGGTTCCACAAGGGTTTCATCAAACGACAAAATTGAGGCTAATGGAGAGTTGCTTCGTGGACTGTGTTGGAATGTGGGGAATAAGAATGAAGTGGTTACCCCAATTAACAATCTAGTAGGCACCCAAAAAAAGAAACCAGCAAAATCACATCTGCTTGAGATTTGCACTAAACAAAAATGGGAGCCTCCTGTTTTTGAGTGCTGCAAGGAGGAAGGGCCAAGCCACAGGAGAATGTTCACCTTCAAGGTTAATGTTAAAGCGAATGATCCCAATACAGATCTCGAATGCTTTAGTTCTCCTCATCCGAAAAAGAAAGCTGCAGCCGAGCAAGCATCTGAAGGGGCACTGTGGTACTTAAAGCATCTTGGTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

202

Amino Acids

22.44

Weight (kDa)

8.93

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	123 - 196	2.8e-16	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	123 - 192	3.3e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	112, 208, 215, 472
AluBI	AGCT	3 cut(s)	28, 160, 545
AluI	AGCT	3 cut(s)	28, 160, 545
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	2 cut(s)	47, 443
ApeKI	GCWGC	3 cut(s)	429, 545, 548
ApoI	RAATTY	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	457
BaeGI	GKGCMC	1 cut(s)	574
BanI	GGYRCC	1 cut(s)	347
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	416, 532, 560
BfaI	CTAG	2 cut(s)	29, 341
BfmI	CTRYAG	1 cut(s)	546
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	3 cut(s)	430, 546, 549
BlsI	GCNGC	3 cut(s)	431, 547, 550
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	232, 349, 411
BmsI	GCATC	3 cut(s)	208, 569, 598
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	89, 147, 180
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	3 cut(s)	416, 532, 560
BshFI	GGCC	2 cut(s)	49, 445
BshNI	GGYRCC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmI	GAATGC	2 cut(s)	10, 518
BsnI	GGCC	2 cut(s)	49, 445
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	493, 505
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	49, 445
BspCNI	CTCAG	3 cut(s)	88, 148, 181
BspLI	GGNNCC	3 cut(s)	232, 349, 411
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	347
BssMI	GATC	2 cut(s)	493, 505
Bst4CI	ACNGT	2 cut(s)	291, 576
BstC8I	GCNNGC	4 cut(s)	51, 81, 117, 558
BstDEI	CTNAG	3 cut(s)	75, 156, 189
BstEII	GGTNACC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	529
BstKTI	GATC	2 cut(s)	496, 508
BstMBI	GATC	2 cut(s)	493, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 557
BstNSI	RCATGY	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	3 cut(s)	416, 532, 560
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	49, 445
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	4 cut(s)	51, 81, 117, 558
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	580
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	3 cut(s)	75, 156, 189
DpnI	GATC	2 cut(s)	495, 507
DpnII	GATC	2 cut(s)	493, 505
Eco147I	AGGCCT	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	585
Eco91I	GGTNACC	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	322
FaeI	CATG	1 cut(s)	37
FaiI	YATR	4 cut(s)	35, 71, 101, 179
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	430, 546, 549
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	430, 546, 549
FspBI	CTAG	2 cut(s)	29, 341
GluI	GCNGC	3 cut(s)	430, 546, 549
HaeIII	GGCC	2 cut(s)	49, 445
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	2 cut(s)	287, 465
Hpy188I	TCNGA	2 cut(s)	534, 565
Hpy188III	TCNNGA	1 cut(s)	509
Hpy8I	GTNNAC	2 cut(s)	287, 465
HpyAV	CCTTC	4 cut(s)	202, 434, 478, 560
HpyCH4III	ACNGT	2 cut(s)	291, 576
HpyCH4V	TGCA	5 cut(s)	65, 131, 393, 432, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 557
HpyF3I	CTNAG	3 cut(s)	75, 156, 189
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	493, 505
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	6 cut(s)	63, 93, 129, 378, 429, 439
Lsp1109I	GCAGC	3 cut(s)	416, 532, 560
LweI	GCATC	3 cut(s)	208, 569, 598
MaeI	CTAG	2 cut(s)	29, 341
MaeIII	GTNAC	2 cut(s)	91, 322
MalI	GATC	2 cut(s)	495, 507
MboI	GATC	2 cut(s)	493, 505
MboII	GAAGA	1 cut(s)	227
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	4 cut(s)	106, 172, 258, 330
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	84, 154, 256, 423, 430, 537
MseI	TTAA	6 cut(s)	44, 56, 333, 477, 483, 584
Mva1269I	GAATGC	2 cut(s)	10, 518
MwoI	GCNNNNNNNGC	2 cut(s)	34, 557
NdeII	GATC	2 cut(s)	493, 505
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	3 cut(s)	232, 349, 411
NmeAIII	GCCGAG	1 cut(s)	577
NspI	RCATGY	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	49
PctI	GAATGC	2 cut(s)	10, 518
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	431, 547, 550
PspEI	GGTNACC	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	232, 349, 411
PspPI	GGNCC	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SaqAI	TTAA	6 cut(s)	44, 56, 333, 477, 483, 584
SatI	GCNGC	3 cut(s)	430, 546, 549
Sau3AI	GATC	2 cut(s)	493, 505
Sau96I	GGNCC	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	574
SetI	ASST	6 cut(s)	30, 162, 213, 470, 477, 547
SfaNI	GCATC	3 cut(s)	208, 569, 598
SfcI	CTRYAG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	18, 383
SmoI	CTYRAG	2 cut(s)	18, 383
Sse9I	AATT	4 cut(s)	106, 172, 258, 330
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	29, 341
StuI	AGGCCT	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	291, 576
TaqI	TCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	106, 172, 258, 330
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	6 cut(s)	44, 56, 333, 477, 483, 584
Tru9I	TTAA	6 cut(s)	44, 56, 333, 477, 483, 584
TscAI	CASTG	1 cut(s)	579
TseI	GCWGC	3 cut(s)	429, 545, 548
TspDTI	ATGAA	2 cut(s)	234, 330
TspRI	CASTG	1 cut(s)	579
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	2 cut(s)	29, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.