Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Reverse (-)

55553006 .. 55553359

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG324100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACTTTTATCAATGCAGAAGATTCGGAATCGATAAGTAGCAATGAGCCTCTACCAGATGAGGTCCCTCTGCAGCTGGCGGACACACCGGGGTCCTTTCTTAAGTCTCTGGGTTTGGAACCACCGATTCCACCAGCTGCTACTTCGTGGTCAGATAACCCTAAGCCTAGGGCCTCAGGAGGCCAGCCAAAGAAAAAGAAGACAAGCAGTACCGGTCAGAATCCACAATCAGCGAGGAGTACGAAAGTAGCTACTCCGACGAGGAAGAGAAAGCCAGCCCCAGACCCAAAGAAGTGGGTTCCGCTGGCTTACAGGGAAAGAAAGAAAGATGACTTCATCTATTTTTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

9.77

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 302
AfaI	GTAC	2 cut(s)	211, 241
AflII	CTTAAG	1 cut(s)	101
AgeI	ACCGGT	1 cut(s)	212
AluBI	AGCT	3 cut(s)	76, 137, 251
AluI	AGCT	3 cut(s)	76, 137, 251
Alw26I	GTCTC	1 cut(s)	111
AoxI	GGCC	2 cut(s)	171, 181
ApeKI	GCWGC	2 cut(s)	73, 137
AsiGI	ACCGGT	1 cut(s)	212
AspA2I	CCTAGG	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	64, 93, 171
AsuC2I	CCSGG	1 cut(s)	90
AvaII	GGWCC	2 cut(s)	64, 93
AvrII	CCTAGG	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	85, 124
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	74, 138
BlnI	CCTAGG	1 cut(s)	167
BlsI	GCNGC	2 cut(s)	75, 139
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	2 cut(s)	64, 93
BmgT120I	GGNCC	3 cut(s)	64, 93, 171
BmiI	GGNNCC	4 cut(s)	66, 94, 120, 300
BmrFI	CCNGG	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	90
Bsa29I	ATCGAT	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	89, 167
BsaWI	WCCGGW	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	212
Bse21I	CCTNAGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	89, 167
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	85, 124
BshFI	GGCC	2 cut(s)	173, 183
BshTI	ACCGGT	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	89, 213
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	173, 183
BspACI	CCGC	2 cut(s)	80, 302
BspANI	GGCC	2 cut(s)	173, 183
BspCNI	CTCAG	1 cut(s)	188
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	4 cut(s)	66, 94, 120, 300
BspMAI	CTGCAG	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	89, 167
BssT1I	CCWWGG	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	4 cut(s)	78, 185, 276, 306
BstDEI	CTNAG	2 cut(s)	162, 175
BstMAI	GTCTC	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	85, 124
BstV2I	GAAGAC	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	173, 183
BsuTUI	ATCGAT	1 cut(s)	32
Cac8I	GCNNGC	4 cut(s)	78, 185, 276, 306
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	64, 93, 171
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	210, 240
CspAI	ACCGGT	1 cut(s)	212
CviQI	GTAC	2 cut(s)	210, 240
DdeI	CTNAG	2 cut(s)	162, 175
DraI	TTTAAA	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	64, 93
Eco81I	CCTNAGG	1 cut(s)	175
EcoO109I	RGGNCCY	3 cut(s)	64, 93, 171
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaqI	GGGAC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	74, 138
Fsp4HI	GCNGC	2 cut(s)	74, 138
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	2 cut(s)	74, 138
HaeIII	GGCC	2 cut(s)	173, 183
HapII	CCGG	2 cut(s)	89, 213
HinfI	GANTC	4 cut(s)	23, 29, 127, 220
HpaII	CCGG	2 cut(s)	89, 213
Hpy188I	TCNGA	4 cut(s)	28, 154, 219, 258
Hpy188III	TCNNGA	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	17, 73
HpyF3I	CTNAG	2 cut(s)	162, 175
Lsp1109I	GCAGC	2 cut(s)	85, 124
MaeI	CTAG	1 cut(s)	168
MboII	GAAGA	3 cut(s)	32, 211, 277
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	7 cut(s)	55, 60, 78, 173, 184, 228, 255
MseI	TTAA	2 cut(s)	102, 348
MspA1I	CMGCKG	3 cut(s)	76, 137, 304
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	2 cut(s)	89, 213
MspR9I	CCNGG	1 cut(s)	90
NciI	CCSGG	1 cut(s)	90
NlaIV	GGNNCC	4 cut(s)	66, 94, 120, 300
PfeI	GAWTC	4 cut(s)	23, 29, 127, 220
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	75, 139
PpuMI	RGGWCCY	2 cut(s)	64, 93
Psp5II	RGGWCCY	2 cut(s)	64, 93
PspN4I	GGNNCC	4 cut(s)	66, 94, 120, 300
PspPI	GGNCC	3 cut(s)	64, 93, 171
PspPPI	RGGWCCY	2 cut(s)	64, 93
PstI	CTGCAG	1 cut(s)	75
PvuII	CAGCTG	2 cut(s)	76, 137
RsaI	GTAC	2 cut(s)	211, 241
RsaNI	GTAC	2 cut(s)	210, 240
SaqAI	TTAA	2 cut(s)	102, 348
SatI	GCNGC	2 cut(s)	74, 138
Sau96I	GGNCC	3 cut(s)	64, 93, 171
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	4 cut(s)	66, 78, 139, 253
SfcI	CTRYAG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	64, 93
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SsiI	CCGC	2 cut(s)	80, 302
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	32
TfiI	GAWTC	4 cut(s)	23, 29, 127, 220
Tru1I	TTAA	2 cut(s)	102, 348
Tru9I	TTAA	2 cut(s)	102, 348
TseI	GCWGC	2 cut(s)	73, 137
TspDTI	ATGAA	1 cut(s)	325
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	64, 93
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.