MD17G1220100.v1.1

Ribonuclease 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003615
Physical Location & Seq
Forward (+)
26830546 .. 26832247
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1220100.v1.1.491

Sequence Viewer

Length: 168 bp
ATGAGAATGTTCGCCTTCAAGGTTATTGTTGAGATAGACGACGAATCAAAAACCCTTTTGGAATGCTTTAGCTCTCCACATTCAAAAAAGAAGGCAGCAGCAGAGCACGCAGCTGAAGGAGCGTTATGGTACTTGAAGAACGTTGGTTATCACTTGAAGGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DND1_DSRM

Protein Analysis

56

Amino Acids

6.31

Weight (kDa)

7.91

Isoelectric Point (pI)

25.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DND1_DSRM PF14709 2 - 46 2.9e-06 double strand RNA binding domain from DEAD END PROTEIN 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 131
AgsI TTSAA 4 cut(s) 19, 84, 136, 157
AluBI AGCT 2 cut(s) 72, 113
AluI AGCT 2 cut(s) 72, 113
Alw21I GWGCWC 1 cut(s) 108
ApeKI GCWGC 3 cut(s) 95, 98, 110
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 107, 110, 122
BisI GCNGC 3 cut(s) 96, 99, 111
BlsI GCNGC 3 cut(s) 97, 100, 112
BseXI GCAGC 3 cut(s) 107, 110, 122
BsiHKAI GWGCWC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 160
BssMI GATC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 107, 119
BstV1I GCAGC 3 cut(s) 107, 110, 122
Cac8I GCNNGC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 2 cut(s) 72, 113
CviKI_1 RGCY 2 cut(s) 72, 113
CviQI GTAC 1 cut(s) 130
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 135
FaiI YATR 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 96, 99, 111
Fsp4HI GCNGC 3 cut(s) 96, 99, 111
GluI GCNGC 3 cut(s) 96, 99, 111
HinfI GANTC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 25, 85, 110, 151
HpyCH4IV ACGT 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 119
HpySE526I ACGT 1 cut(s) 141
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 3 cut(s) 107, 110, 122
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 107, 119
NdeII GATC 1 cut(s) 160
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 97, 100, 112
Psp1406I AACGTT 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 3 cut(s) 96, 99, 111
Sau3AI GATC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 108
SetI ASST 4 cut(s) 24, 74, 115, 144
SgeI CNNG 3 cut(s) 31, 119, 145
TaiI ACGT 1 cut(s) 144
TfiI GAWTC 1 cut(s) 44
TseI GCWGC 3 cut(s) 95, 98, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.