Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Forward (+)

30314493 .. 30316002

Gene Structure 1510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGGATCAGGAAACGAAGCGGATAACCAAAAAACCGTCAAGATCGATCATCATCAGTCTCAAAGATATTCCTCCTCTCGACCCTTCTTCTATTCCCTCTATGAAACCAATGGCGCAAGATCATCATAATGTGGGAATGCAGAGATTCCAAGAGAAGACTGACTTCAAGTTTGAAGAAGAAGACAATGCCATTTCTTCCTTCTCTAACATTCAAATTGATCCTAACAGCACAAGAAGCATTTCACTAGAGAAGAAGCTTGCTCCTAAACCAGATGAAGAACACACCACCACCACCAAACCCATATCTAAAGATGATGAATCTAAGACTAGGAGAGGCTCAGCTAAATCGGTGTTACACGAAATGTGTGCTTCCAAGCGTTGGAGACCTCCTGTTTATGAATGCTGCAATGTTGATGGACCTTGCCATTTGAGATTATTTACATACAAAGTTATGGTTGAGATTAGAGATTCTTCAGGGAAAACTGTTTTGGAGTGTTTTGGGGATCCCAGACGCAAAAAGAAAGCTGCTGCTGAGCATGCAGCAGAAGGAGCGCTTTGGTATCTTGAGCATGTGAAGACAAAGCCGCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

198

Amino Acids

22.62

Weight (kDa)

8.73

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	114 - 190	1.1e-24	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	115 - 186	1.6e-06	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AciI	CCGC	2 cut(s)	22, 587
AclWI	GGATC	4 cut(s)	15, 215, 500, 513
AcuI	CTGAAG	1 cut(s)	459
AfeI	AGCGCT	1 cut(s)	555
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	169, 176, 215
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	3 cut(s)	259, 344, 527
AluI	AGCT	3 cut(s)	259, 344, 527
Alw26I	GTCTC	2 cut(s)	65, 379
AlwI	GGATC	4 cut(s)	15, 215, 500, 513
Aor51HI	AGCGCT	1 cut(s)	555
ApeKI	GCWGC	4 cut(s)	405, 527, 530, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	241
AspLEI	GCGC	2 cut(s)	118, 556
AspS9I	GGNCC	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	505
BbsI	GAAGAC	3 cut(s)	164, 189, 584
BbvI	GCAGC	4 cut(s)	392, 514, 517, 554
BccI	CCATC	1 cut(s)	410
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BcoDI	GTCTC	2 cut(s)	65, 379
BfaI	CTAG	2 cut(s)	248, 330
BfoI	RGCGCY	1 cut(s)	557
BisI	GCNGC	5 cut(s)	406, 528, 531, 543, 587
BlpI	GCTNAGC	2 cut(s)	340, 534
BlsI	GCNGC	5 cut(s)	407, 529, 532, 544, 588
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	507
BpiI	GAAGAC	3 cut(s)	164, 189, 584
Bpu1102I	GCTNAGC	2 cut(s)	340, 534
BpuEI	CTTGAG	1 cut(s)	587
Bsa29I	ATCGAT	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	354, 525
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	392, 514, 517, 554
BshVI	ATCGAT	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	65, 379
BsmI	GAATGC	2 cut(s)	144, 407
Bso31I	GGTCTC	1 cut(s)	379
Bsp143I	GATC	6 cut(s)	7, 44, 48, 121, 220, 505
Bsp1720I	GCTNAGC	2 cut(s)	340, 534
BspACI	CCGC	2 cut(s)	22, 587
BspCNI	CTCAG	2 cut(s)	353, 526
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	4 cut(s)	15, 215, 500, 513
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	415
BssMI	GATC	6 cut(s)	7, 44, 48, 121, 220, 505
Bst4CI	ACNGT	2 cut(s)	39, 487
BstC8I	GCNNGC	2 cut(s)	261, 540
BstDEI	CTNAG	3 cut(s)	324, 340, 534
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	2 cut(s)	118, 556
BstKTI	GATC	6 cut(s)	10, 47, 51, 124, 223, 508
BstMAI	GTCTC	2 cut(s)	65, 379
BstMBI	GATC	6 cut(s)	7, 44, 48, 121, 220, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	237, 539, 551
BstNSI	RCATGY	2 cut(s)	542, 575
BstV1I	GCAGC	4 cut(s)	392, 514, 517, 554
BstV2I	GAAGAC	3 cut(s)	164, 189, 584
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
Bsu15I	ATCGAT	1 cut(s)	47
BsuTUI	ATCGAT	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	261, 540
CfoI	GCGC	2 cut(s)	118, 556
Cfr13I	GGNCC	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	1 cut(s)	522
CviAII	CATG	2 cut(s)	539, 572
CviJI	RGCY	5 cut(s)	259, 339, 344, 527, 586
CviKI_1	RGCY	5 cut(s)	259, 339, 344, 527, 586
DdeI	CTNAG	3 cut(s)	324, 340, 534
DpnI	GATC	6 cut(s)	9, 46, 50, 123, 222, 507
DpnII	GATC	6 cut(s)	7, 44, 48, 121, 220, 505
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	419
Eco47III	AGCGCT	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	459
FaeI	CATG	2 cut(s)	542, 575
FaiI	YATR	8 cut(s)	104, 129, 305, 399, 445, 455, 540, 573
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 540, 572
FatI	CATG	2 cut(s)	538, 571
Fnu4HI	GCNGC	5 cut(s)	406, 528, 531, 543, 587
Fsp4HI	GCNGC	5 cut(s)	406, 528, 531, 543, 587
FspBI	CTAG	2 cut(s)	248, 330
GlaI	GCGC	2 cut(s)	117, 555
GluI	GCNGC	5 cut(s)	406, 528, 531, 543, 587
HaeII	RGCGCY	1 cut(s)	557
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	2 cut(s)	118, 556
Hin1II	CATG	2 cut(s)	542, 575
Hin6I	GCGC	2 cut(s)	116, 554
HinP1I	GCGC	2 cut(s)	116, 554
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	3 cut(s)	147, 320, 470
Hpy188III	TCNNGA	4 cut(s)	11, 42, 80, 566
HpyAV	CCTTC	3 cut(s)	96, 211, 542
HpyCH4III	ACNGT	2 cut(s)	39, 487
HpyCH4V	TGCA	3 cut(s)	142, 408, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	237, 539, 551
HpyF3I	CTNAG	3 cut(s)	324, 340, 534
Hsp92II	CATG	2 cut(s)	542, 575
HspAI	GCGC	2 cut(s)	116, 554
Kzo9I	GATC	6 cut(s)	7, 44, 48, 121, 220, 505
LmnI	GCTCC	2 cut(s)	268, 551
LpnPI	CCDG	4 cut(s)	285, 405, 462, 523
Lsp1109I	GCAGC	4 cut(s)	392, 514, 517, 554
MaeI	CTAG	2 cut(s)	248, 330
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	6 cut(s)	9, 46, 50, 123, 222, 507
MboI	GATC	6 cut(s)	7, 44, 48, 121, 220, 505
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	5 cut(s)	84, 87, 109, 329, 399
MroXI	GAANNNNTTC	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	129
Mva1269I	GAATGC	2 cut(s)	144, 407
MwoI	GCNNNNNNNGC	3 cut(s)	237, 539, 551
NdeII	GATC	6 cut(s)	7, 44, 48, 121, 220, 505
NlaIII	CATG	2 cut(s)	542, 575
NlaIV	GGNNCC	1 cut(s)	507
NspI	RCATGY	2 cut(s)	542, 575
PaeI	GCATGC	1 cut(s)	542
PctI	GAATGC	2 cut(s)	144, 407
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	147, 320, 470
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	5 cut(s)	407, 529, 532, 544, 588
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	129
SatI	GCNGC	5 cut(s)	406, 528, 531, 543, 587
Sau3AI	GATC	6 cut(s)	7, 44, 48, 121, 220, 505
Sau96I	GGNCC	1 cut(s)	419
SetI	ASST	5 cut(s)	261, 346, 391, 424, 529
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	22, 587
SspMI	CTAG	2 cut(s)	248, 330
TaaI	ACNGT	2 cut(s)	39, 487
TaqI	TCGA	2 cut(s)	47, 81
TasI	AATT	1 cut(s)	216
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	3 cut(s)	147, 320, 470
TseI	GCWGC	4 cut(s)	405, 527, 530, 542
TspDTI	ATGAA	4 cut(s)	119, 291, 333, 414
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	419
XceI	RCATGY	2 cut(s)	542, 575
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	2 cut(s)	248, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.