RLG00000012284

Ribonuclease 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003615
Physical Location & Seq
Forward (+)
17149739 .. 17151155
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012284

Sequence Viewer

Length: 417 bp
ATGAATGCAGAAAATGCTCTTGATCAGCTACAGGCCAAGTTCGCCAAGAGGGAAGTTAAAGTACTGAACAATAGATCAAAACTGTATAACGTATGTGATGCATACAAATGGAAGCACCCTGTGTATGAGTGCTGCAAAGAGGAAGGGCCGGCCCACCTGAGGATGTTCACCTTCAAGGTCGTTATTGAGATAAAAAAGGAACCCTCAGAGCCAAACACAGAAGTGGAATGCTTTAGTGCACCGCAGCTGAATAAGACAGCTGCAGCGGAACACGCCGCAGAAGGAGCGTTATGGTACTTGAAGAAGGTCTACGCCTTTGTTTCCGTACGGCTAAAACGATACACCGATTACGGGGAATGGAGGAACCAGGCGGACACCACAATGAGCTCAATACCTCCATCCCCGCCCTCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DND1_DSRM

Protein Analysis

139

Amino Acids

15.85

Weight (kDa)

8.62

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DND1_DSRM PF14709 25 - 101 1.7e-16 double strand RNA binding domain from DEAD END PROTEIN 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 309
AciI CCGC 5 cut(s) 242, 266, 276, 371, 404
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 3 cut(s) 63, 296, 327
AfiI CCNNNNNNNGG 2 cut(s) 159, 351
AgsI TTSAA 2 cut(s) 175, 301
AjnI CCWGG 1 cut(s) 366
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 4 cut(s) 28, 247, 260, 387
AluI AGCT 4 cut(s) 28, 247, 260, 387
Alw21I GWGCWC 2 cut(s) 241, 389
Alw44I GTGCAC 1 cut(s) 237
AoxI GGCC 3 cut(s) 33, 146, 150
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 4 cut(s) 132, 244, 260, 263
AspS9I GGNCC 2 cut(s) 146, 151
AsuHPI GGTGA 1 cut(s) 160
AxyI CCTNAGG 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 389
BarI GAAGNNNNNNTAC 4 cut(s) 45, 77, 293, 325
Bbv12I GWGCWC 2 cut(s) 241, 389
BbvI GCAGC 4 cut(s) 119, 247, 256, 275
BccI CCATC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 368
BclI TGATCA 1 cut(s) 22
BfmI CTRYAG 2 cut(s) 29, 261
BisI GCNGC 5 cut(s) 133, 245, 261, 264, 276
BlsI GCNGC 5 cut(s) 134, 246, 262, 265, 277
BmcAI AGTACT 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 146, 151
BmiI GGNNCC 2 cut(s) 201, 365
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 351
Bse118I RCCGGY 1 cut(s) 148
Bse21I CCTNAGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 368
BseGI GGATG 2 cut(s) 168, 398
BseLI CCNNNNNNNGG 2 cut(s) 159, 351
BseMII CTCAG 2 cut(s) 149, 219
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 4 cut(s) 119, 247, 256, 275
BshFI GGCC 3 cut(s) 35, 148, 152
BsiHKAI GWGCWC 2 cut(s) 241, 389
BsiSI CCGG 1 cut(s) 149
BsiWI CGTACG 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 159, 351
BsmI GAATGC 2 cut(s) 10, 233
BsnI GGCC 3 cut(s) 35, 148, 152
Bsp1286I GDGCHC 2 cut(s) 241, 389
Bsp143I GATC 2 cut(s) 22, 74
BspACI CCGC 5 cut(s) 242, 266, 276, 371, 404
BspANI GGCC 3 cut(s) 35, 148, 152
BspCNI CTCAG 2 cut(s) 150, 218
BspLI GGNNCC 2 cut(s) 201, 365
BspMAI CTGCAG 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
BssMI GATC 2 cut(s) 22, 74
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 158, 205
BstF5I GGATG 2 cut(s) 168, 398
BstKTI GATC 2 cut(s) 25, 77
BstMBI GATC 2 cut(s) 22, 74
BstMWI GCNNNNNNNGC 4 cut(s) 14, 41, 272, 284
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 2 cut(s) 29, 261
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 4 cut(s) 119, 247, 256, 275
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 35, 148, 152
BtsCI GGATG 2 cut(s) 168, 398
Cac8I GCNNGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 146, 151
Csp6I GTAC 3 cut(s) 62, 295, 326
CviJI RGCY 9 cut(s) 28, 35, 148, 152, 211, 247, 260, 331, 387
CviKI_1 RGCY 9 cut(s) 28, 35, 148, 152, 211, 247, 260, 331, 387
CviQI GTAC 3 cut(s) 62, 295, 326
DdeI CTNAG 2 cut(s) 158, 205
DpnI GATC 2 cut(s) 24, 76
DpnII GATC 2 cut(s) 22, 74
DraIII CACNNNGTG 1 cut(s) 121
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 387
Eco81I CCTNAGG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 389
FaiI YATR 5 cut(s) 87, 94, 103, 126, 292
FauI CCCGC 1 cut(s) 411
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 5 cut(s) 133, 245, 261, 264, 276
FokI GGATG 2 cut(s) 175, 385
FriOI GRGCYC 1 cut(s) 389
FseI GGCCGGCC 1 cut(s) 152
Fsp4HI GCNGC 5 cut(s) 133, 245, 261, 264, 276
GluI GCNGC 5 cut(s) 133, 245, 261, 264, 276
HaeIII GGCC 3 cut(s) 35, 148, 152
HapII CCGG 1 cut(s) 149
HpaII CCGG 1 cut(s) 149
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 3 cut(s) 168, 239, 310
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 3 cut(s) 168, 239, 310
HpyAV CCTTC 4 cut(s) 137, 181, 275, 298
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 5 cut(s) 8, 101, 135, 239, 263
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 41, 272, 284
HpyF3I CTNAG 2 cut(s) 158, 205
HpySE526I ACGT 1 cut(s) 90
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 74
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 6 cut(s) 17, 132, 162, 170, 353, 380
Lsp1109I GCAGC 4 cut(s) 119, 247, 256, 275
LweI GCATC 1 cut(s) 88
MaeII ACGT 1 cut(s) 90
MalI GATC 2 cut(s) 24, 76
MboI GATC 2 cut(s) 22, 74
MboII GAAGA 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 241, 389
MnlI CCTC 6 cut(s) 42, 133, 153, 214, 354, 405
Mph1103I ATGCAT 1 cut(s) 103
MroNI GCCGGC 1 cut(s) 148
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 3 cut(s) 106, 221, 380
MspA1I CMGCKG 3 cut(s) 247, 260, 266
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 368
Mva1269I GAATGC 2 cut(s) 10, 233
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 4 cut(s) 14, 41, 272, 284
NaeI GCCGGC 1 cut(s) 150
NdeII GATC 2 cut(s) 22, 74
NgoMIV GCCGGC 1 cut(s) 148
NlaIV GGNNCC 2 cut(s) 201, 365
NsiI ATGCAT 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PctI GAATGC 2 cut(s) 10, 233
PdiI GCCGGC 1 cut(s) 150
Pfl23II CGTACG 1 cut(s) 325
PkrI GCNGC 5 cut(s) 134, 246, 262, 265, 277
Psp124BI GAGCTC 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspLI CGTACG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 201, 365
PspPI GGNCC 2 cut(s) 146, 151
PstI CTGCAG 1 cut(s) 265
PvuII CAGCTG 2 cut(s) 247, 260
RigI GGCCGGCC 1 cut(s) 152
RsaI GTAC 3 cut(s) 63, 296, 327
RsaNI GTAC 3 cut(s) 62, 295, 326
RseI CAYNNNNRTG 3 cut(s) 106, 221, 380
SacI GAGCTC 1 cut(s) 389
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 5 cut(s) 133, 245, 261, 264, 276
Sau3AI GATC 2 cut(s) 22, 74
Sau96I GGNCC 2 cut(s) 146, 151
ScaI AGTACT 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 2 cut(s) 241, 389
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 2 cut(s) 29, 261
SmiMI CAYNNNNRTG 3 cut(s) 106, 221, 380
SsiI CCGC 5 cut(s) 242, 266, 276, 371, 404
SstI GAGCTC 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 93
TatI WGTACW 1 cut(s) 61
TauI GCSGC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 4 cut(s) 132, 244, 260, 263
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 313
VneI GTGCAC 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 309
ZrmI AGTACT 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.