Rh6CG330300

Ribonuclease 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003615
Physical Location & Seq
Reverse (-)
51669163 .. 51715180
46018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG330300.1

Sequence Viewer

Length: 621 bp
ATGAATCAAAACGCTGATGGAAGAGCTTTCCTCAACATTGAAGAAGATTCAGAATCGATAAGTAGCAATGAGCCTCTACCAGATGAGGTCCCTCTGCAGCTGGCGGACACACCGGGGCCTTTTCTTAAGTCTCTGGGTTTGGAACCACCGATTCCACCAGCTGCTACTTCACGGTCAGATACCCCTAAGCCTAGGGCCTCAGATAACCCTAAACCTAGGGCCTCAGGAGGCCAGCCAAAAAAAAAGAAGACAAGCAGTACCGGTCAGAATCCACAATCAGCGAGGAGTACGAAAGAAGCTACTCCGACGAGGAAGAGAAAGCCAGCCCCAGACCCAAAGATGTGGGTTCCGCTGGTTAAAGTACTGAACAAAAGATCAAAACTGTATAACGTATGTGATGCATACAAATGGAAGCACCCTGTGTATGAGTGCTGCAAAGAGGAAGGGCCGGCCCACCTGAGGATGTTCACCTTCAAGGTCGTTATTGAGATAAAAAAGGAACCCTCAGAGCCAAACACAGAAGTGGAATGCTTTAGTGCACCGCAGCTGAATAAGAAAGCTGCAGCGGAACACGCCGCAGAAGGAGCGTTATGGTACTTGAAGAAGGTTGGTTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DND1_DSRM

Protein Analysis

206

Amino Acids

22.81

Weight (kDa)

9.16

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DND1_DSRM PF14709 125 - 201 1.1e-16 double strand RNA binding domain from DEAD END PROTEIN 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 104, 350, 542, 566, 576
AdeI CACNNNGTG 1 cut(s) 421
AfaI GTAC 4 cut(s) 259, 289, 363, 596
AfiI CCNNNNNNNGG 1 cut(s) 459
AflII CTTAAG 1 cut(s) 125
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 3 cut(s) 41, 475, 601
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 6 cut(s) 26, 100, 161, 299, 547, 560
AluI AGCT 6 cut(s) 26, 100, 161, 299, 547, 560
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 135
Alw44I GTGCAC 1 cut(s) 537
AoxI GGCC 6 cut(s) 116, 195, 219, 229, 446, 450
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 6 cut(s) 97, 161, 432, 544, 560, 563
AsiGI ACCGGT 1 cut(s) 260
AspA2I CCTAGG 2 cut(s) 191, 215
AspS9I GGNCC 6 cut(s) 88, 116, 195, 219, 446, 451
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 460
AvaII GGWCC 1 cut(s) 88
AvrII CCTAGG 2 cut(s) 191, 215
AxyI CCTNAGG 2 cut(s) 223, 458
BaeGI GKGCMC 1 cut(s) 541
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 6 cut(s) 109, 148, 419, 547, 556, 575
BccI CCATC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 2 cut(s) 192, 216
BfmI CTRYAG 2 cut(s) 95, 561
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 7 cut(s) 98, 162, 433, 545, 561, 564, 576
BlnI CCTAGG 2 cut(s) 191, 215
BlsI GCNGC 7 cut(s) 99, 163, 434, 546, 562, 565, 577
BmcAI AGTACT 1 cut(s) 363
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 6 cut(s) 88, 116, 195, 219, 446, 451
BmiI GGNNCC 5 cut(s) 90, 117, 144, 348, 501
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 254
BplI GAGNNNNNCTC 2 cut(s) 15, 47
Bpu10I CCTNAGC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 113, 191, 215
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse118I RCCGGY 2 cut(s) 260, 448
Bse21I CCTNAGG 2 cut(s) 223, 458
Bse3DI GCAATG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 113, 191, 215
BseGI GGATG 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 4 cut(s) 213, 237, 449, 519
BseRI GAGGAG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 6 cut(s) 109, 148, 419, 547, 556, 575
BshFI GGCC 6 cut(s) 118, 197, 221, 231, 448, 452
BshTI ACCGGT 1 cut(s) 260
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 3 cut(s) 113, 261, 449
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 6 cut(s) 118, 197, 221, 231, 448, 452
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 1 cut(s) 374
BspACI CCGC 5 cut(s) 104, 350, 542, 566, 576
BspANI GGCC 6 cut(s) 118, 197, 221, 231, 448, 452
BspCNI CTCAG 4 cut(s) 212, 236, 450, 518
BspDI ATCGAT 1 cut(s) 56
BspLI GGNNCC 5 cut(s) 90, 117, 144, 348, 501
BspMAI CTGCAG 2 cut(s) 99, 565
BspQI GCTCTTC 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 2 cut(s) 260, 448
BssAI RCCGGY 2 cut(s) 260, 448
BssECI CCNNGG 3 cut(s) 113, 191, 215
BssMI GATC 1 cut(s) 374
BssT1I CCWWGG 2 cut(s) 191, 215
Bst4CI ACNGT 2 cut(s) 174, 384
Bst6I CTCTTC 2 cut(s) 16, 308
BstAFI CTTAAG 1 cut(s) 125
BstC8I GCNNGC 4 cut(s) 102, 233, 324, 450
BstDEI CTNAG 5 cut(s) 186, 199, 223, 458, 505
BstF5I GGATG 1 cut(s) 468
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 2 cut(s) 572, 584
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 95, 561
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 6 cut(s) 109, 148, 419, 547, 556, 575
BstV2I GAAGAC 1 cut(s) 254
BstXI CCANNNNNNTGG 1 cut(s) 342
Bsu15I ATCGAT 1 cut(s) 56
Bsu36I CCTNAGG 2 cut(s) 223, 458
BsuRI GGCC 6 cut(s) 118, 197, 221, 231, 448, 452
BsuTUI ATCGAT 1 cut(s) 56
BtsCI GGATG 1 cut(s) 468
Cac8I GCNNGC 4 cut(s) 102, 233, 324, 450
Cfr10I RCCGGY 2 cut(s) 260, 448
Cfr13I GGNCC 6 cut(s) 88, 116, 195, 219, 446, 451
ClaI ATCGAT 1 cut(s) 56
Csp6I GTAC 4 cut(s) 258, 288, 362, 595
CspAI ACCGGT 1 cut(s) 260
CviQI GTAC 4 cut(s) 258, 288, 362, 595
DdeI CTNAG 5 cut(s) 186, 199, 223, 458, 505
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
DraIII CACNNNGTG 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 16, 308
EarI CTCTTC 2 cut(s) 16, 308
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 191, 215
Eco47I GGWCC 1 cut(s) 88
Eco81I CCTNAGG 2 cut(s) 223, 458
EcoO109I RGGNCCY 4 cut(s) 88, 116, 195, 219
EcoT14I CCWWGG 2 cut(s) 191, 215
EcoT22I ATGCAT 1 cut(s) 403
ErhI CCWWGG 2 cut(s) 191, 215
FaiI YATR 6 cut(s) 387, 394, 403, 426, 592, 615
FaqI GGGAC 1 cut(s) 74
Fnu4HI GCNGC 7 cut(s) 98, 162, 433, 545, 561, 564, 576
FokI GGATG 1 cut(s) 475
FseI GGCCGGCC 1 cut(s) 452
Fsp4HI GCNGC 7 cut(s) 98, 162, 433, 545, 561, 564, 576
FspBI CTAG 2 cut(s) 192, 216
GluI GCNGC 7 cut(s) 98, 162, 433, 545, 561, 564, 576
HaeIII GGCC 6 cut(s) 118, 197, 221, 231, 448, 452
HapII CCGG 3 cut(s) 113, 261, 449
HinfI GANTC 5 cut(s) 4, 47, 53, 151, 268
HpaII CCGG 3 cut(s) 113, 261, 449
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 2 cut(s) 468, 539
Hpy188I TCNGA 6 cut(s) 52, 178, 202, 267, 306, 508
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 2 cut(s) 468, 539
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 4 cut(s) 437, 481, 575, 598
HpyCH4III ACNGT 2 cut(s) 174, 384
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 97, 401, 435, 539, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 584
HpyF3I CTNAG 5 cut(s) 186, 199, 223, 458, 505
HpySE526I ACGT 1 cut(s) 390
KroI GCCGGC 1 cut(s) 448
KroNI GCCGGC 1 cut(s) 450
Kzo9I GATC 1 cut(s) 374
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 584
Lsp1109I GCAGC 6 cut(s) 109, 148, 419, 547, 556, 575
LweI GCATC 1 cut(s) 388
MaeI CTAG 2 cut(s) 192, 216
MaeII ACGT 1 cut(s) 390
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 6 cut(s) 33, 53, 56, 259, 325, 613
MhlI GDGCHC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 329
Mph1103I ATGCAT 1 cut(s) 403
MroNI GCCGGC 1 cut(s) 448
MseI TTAA 3 cut(s) 126, 357, 619
MslI CAYNNNNRTG 2 cut(s) 406, 521
MspA1I CMGCKG 5 cut(s) 100, 161, 352, 547, 566
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 3 cut(s) 113, 261, 449
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 533
MwoI GCNNNNNNNGC 2 cut(s) 572, 584
NaeI GCCGGC 1 cut(s) 450
NciI CCSGG 1 cut(s) 114
NdeII GATC 1 cut(s) 374
NgoMIV GCCGGC 1 cut(s) 448
NlaIV GGNNCC 5 cut(s) 90, 117, 144, 348, 501
NsiI ATGCAT 1 cut(s) 403
OliI CACNNNNGTG 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 16
PctI GAATGC 1 cut(s) 533
PdiI GCCGGC 1 cut(s) 450
PfeI GAWTC 5 cut(s) 4, 47, 53, 151, 268
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 7 cut(s) 99, 163, 434, 546, 562, 565, 577
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
PspN4I GGNNCC 5 cut(s) 90, 117, 144, 348, 501
PspPI GGNCC 6 cut(s) 88, 116, 195, 219, 446, 451
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 2 cut(s) 99, 565
PvuII CAGCTG 3 cut(s) 100, 161, 547
RigI GGCCGGCC 1 cut(s) 452
RsaI GTAC 4 cut(s) 259, 289, 363, 596
RsaNI GTAC 4 cut(s) 258, 288, 362, 595
RseI CAYNNNNRTG 2 cut(s) 406, 521
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 3 cut(s) 126, 357, 619
SatI GCNGC 7 cut(s) 98, 162, 433, 545, 561, 564, 576
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 6 cut(s) 88, 116, 195, 219, 446, 451
ScaI AGTACT 1 cut(s) 363
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 541
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 2 cut(s) 95, 561
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 2 cut(s) 406, 521
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 5 cut(s) 104, 350, 542, 566, 576
SspMI CTAG 2 cut(s) 192, 216
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 191, 215
TaaI ACNGT 2 cut(s) 174, 384
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 56
TatI WGTACW 1 cut(s) 361
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 5 cut(s) 4, 47, 53, 151, 268
Tru1I TTAA 3 cut(s) 126, 357, 619
Tru9I TTAA 3 cut(s) 126, 357, 619
TseI GCWGC 6 cut(s) 97, 161, 432, 544, 560, 563
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 125
VneI GTGCAC 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 88
XmaJI CCTAGG 2 cut(s) 191, 215
XspI CTAG 2 cut(s) 192, 216
ZrmI AGTACT 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.