Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8221574.1

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 608

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8221574.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 311 bp

aaaatggtcttgatcagctacaggccaagttcgccaagcgggaagttaaagcactgaacaaaagatcaaaactgtataacgtatgtgatgcatacaaatggaagcaccctgtgtatgagtgctgcaaagaggaagggccggcccacctgaggatgttcaccttcaaggtcgttattgagataaaaaaggaaccctcagagccaaacacagaagtggaatgctttagtgcaccgcagctgaataagaaagctgcagcggaacacgccgcagaaggagcgttatggtacttgaagaaggttggttatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

102

Amino Acids

11.72

Weight (kDa)

8.86

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	39, 232, 256, 266
AdeI	CACNNNGTG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	165, 291
AleI	CACNNNNGTG	1 cut(s)	211
AluBI	AGCT	3 cut(s)	18, 237, 250
AluI	AGCT	3 cut(s)	18, 237, 250
Alw21I	GWGCWC	1 cut(s)	231
Alw44I	GTGCAC	1 cut(s)	227
AoxI	GGCC	3 cut(s)	23, 136, 140
ApaLI	GTGCAC	1 cut(s)	227
ApeKI	GCWGC	4 cut(s)	122, 234, 250, 253
AspS9I	GGNCC	2 cut(s)	136, 141
AsuHPI	GGTGA	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	4 cut(s)	109, 237, 246, 265
BclI	TGATCA	1 cut(s)	12
BfmI	CTRYAG	2 cut(s)	19, 251
BisI	GCNGC	5 cut(s)	123, 235, 251, 254, 266
BlsI	GCNGC	5 cut(s)	124, 236, 252, 255, 267
BmgT120I	GGNCC	2 cut(s)	136, 141
BmiI	GGNNCC	1 cut(s)	191
BmsI	GCATC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	138
Bse21I	CCTNAGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	139, 209
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	4 cut(s)	109, 237, 246, 265
BshFI	GGCC	3 cut(s)	25, 138, 142
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	25, 138, 142
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	12, 64
BspACI	CCGC	4 cut(s)	39, 232, 256, 266
BspANI	GGCC	3 cut(s)	25, 138, 142
BspCNI	CTCAG	2 cut(s)	140, 208
BspLI	GGNNCC	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssMI	GATC	2 cut(s)	12, 64
Bst4CI	ACNGT	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	148, 195
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	2 cut(s)	15, 67
BstMBI	GATC	2 cut(s)	12, 64
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 262, 274
BstSFI	CTRYAG	2 cut(s)	19, 251
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	4 cut(s)	109, 237, 246, 265
Bsu36I	CCTNAGG	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	25, 138, 142
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	136, 141
Csp6I	GTAC	1 cut(s)	285
CviJI	RGCY	7 cut(s)	18, 25, 138, 142, 201, 237, 250
CviKI_1	RGCY	7 cut(s)	18, 25, 138, 142, 201, 237, 250
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	148, 195
DpnI	GATC	2 cut(s)	14, 66
DpnII	GATC	2 cut(s)	12, 64
DraIII	CACNNNGTG	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	93
FaiI	YATR	6 cut(s)	77, 84, 93, 116, 282, 305
FauI	CCCGC	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	123, 235, 251, 254, 266
FokI	GGATG	1 cut(s)	165
FseI	GGCCGGCC	1 cut(s)	142
Fsp4HI	GCNGC	5 cut(s)	123, 235, 251, 254, 266
GluI	GCNGC	5 cut(s)	123, 235, 251, 254, 266
HaeIII	GGCC	3 cut(s)	25, 138, 142
HapII	CCGG	1 cut(s)	139
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	158, 229
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	2 cut(s)	158, 229
HpyAV	CCTTC	4 cut(s)	127, 171, 265, 288
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	4 cut(s)	91, 125, 229, 253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 262, 274
HpyF3I	CTNAG	2 cut(s)	148, 195
HpySE526I	ACGT	1 cut(s)	80
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 64
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	4 cut(s)	7, 122, 152, 160
Lsp1109I	GCAGC	4 cut(s)	109, 237, 246, 265
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	80
MalI	GATC	2 cut(s)	14, 66
MboI	GATC	2 cut(s)	12, 64
MboII	GAAGA	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	231
MnlI	CCTC	3 cut(s)	123, 143, 204
Mph1103I	ATGCAT	1 cut(s)	93
MroNI	GCCGGC	1 cut(s)	138
MseI	TTAA	2 cut(s)	47, 309
MslI	CAYNNNNRTG	2 cut(s)	96, 211
MspA1I	CMGCKG	2 cut(s)	237, 256
MspI	CCGG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	3 cut(s)	31, 262, 274
NaeI	GCCGGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	12, 64
NgoMIV	GCCGGC	1 cut(s)	138
NlaIV	GGNNCC	1 cut(s)	191
NsiI	ATGCAT	1 cut(s)	93
OliI	CACNNNNGTG	1 cut(s)	211
PctI	GAATGC	1 cut(s)	223
PdiI	GCCGGC	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	124, 236, 252, 255, 267
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	2 cut(s)	136, 141
PstI	CTGCAG	1 cut(s)	255
PvuII	CAGCTG	1 cut(s)	237
RigI	GGCCGGCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	96, 211
SaqAI	TTAA	2 cut(s)	47, 309
SatI	GCNGC	5 cut(s)	123, 235, 251, 254, 266
Sau3AI	GATC	2 cut(s)	12, 64
Sau96I	GGNCC	2 cut(s)	136, 141
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	8 cut(s)	20, 83, 149, 163, 170, 239, 252, 299
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	2 cut(s)	19, 251
SmiMI	CAYNNNNRTG	2 cut(s)	96, 211
SsiI	CCGC	4 cut(s)	39, 232, 256, 266
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	83
TauI	GCSGC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	47, 309
Tru9I	TTAA	2 cut(s)	47, 309
TscAI	CASTG	1 cut(s)	59
TseI	GCWGC	4 cut(s)	122, 234, 250, 253
TspRI	CASTG	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.