FvH4_2g22602

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003615
Physical Location & Seq
Reverse (-)
18539242 .. 18540982
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22602.t1

Sequence Viewer

Length: 378 bp
ATGAATCAATACCCTGATGGACGATTTTTCCTCAACTATAGAGCTGATACCGAATCGGTGGACAGTAGCAACGAAGCTCTGCCTGACGAGGTTCCTCCTCAGCTGGCGGATACGCCGGGGCCTTTCCTCAAGTATCTGGCCTTGGAACCACCACGTCCACCAGTTGCTACTGCAGTAGCTTCACCTGAAACCAGTACCGGAAGACGCTCGGAAAAGAAGAAGAAGCCGAGCAGTAAGAGCAGTCCCAAAGTTTCTGCTCTTACACCGAAGAGGAAACCAGCGCCTGAGCCGAAGACTTGGATTCCGCTGTGTGTGAGAGAGAGCAAATGGGACGCGTACTACTACGCTAATGATACGAAAAAATTTCATCTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.05

Weight (kDa)

9.43

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 2 cut(s) 107, 305
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 2 cut(s) 196, 338
AflIII ACRYGT 1 cut(s) 333
AjiI CACGTC 1 cut(s) 155
AluBI AGCT 4 cut(s) 44, 77, 103, 179
AluI AGCT 4 cut(s) 44, 77, 103, 179
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 2 cut(s) 119, 138
ApoI RAATTY 1 cut(s) 362
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 174
BbsI GAAGAC 2 cut(s) 208, 299
BbvCI CCTCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 11
BciVI GTATCC 1 cut(s) 103
BcnI CCSGG 1 cut(s) 117
BfmI CTRYAG 2 cut(s) 37, 171
BfoI RGCGCY 1 cut(s) 284
BfuI GTATCC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 3 cut(s) 93, 120, 147
BmrFI CCNGG 1 cut(s) 117
BpiI GAAGAC 2 cut(s) 208, 299
Bpu10I CCTNAGC 2 cut(s) 99, 285
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 116, 141
BsaWI WCCGGW 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 161, 192
BseDI CCNNGG 2 cut(s) 116, 141
BseMII CTCAG 2 cut(s) 113, 276
BseNI ACTGG 2 cut(s) 161, 192
BseRI GAGGAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 2 cut(s) 121, 140
BsiSI CCGG 2 cut(s) 116, 198
BslFI GGGAC 2 cut(s) 228, 344
BsmFI GGGAC 2 cut(s) 228, 344
BsnI GGCC 2 cut(s) 121, 140
BspACI CCGC 2 cut(s) 107, 305
BspANI GGCC 2 cut(s) 121, 140
BspCNI CTCAG 2 cut(s) 112, 277
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 3 cut(s) 93, 120, 147
BspMAI CTGCAG 1 cut(s) 175
BsrI ACTGG 2 cut(s) 161, 192
BssECI CCNNGG 2 cut(s) 116, 141
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 99, 285
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 2 cut(s) 37, 171
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 2 cut(s) 208, 299
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 2 cut(s) 121, 140
BtrI CACGTC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 119
CseI GACGC 2 cut(s) 213, 341
Csp6I GTAC 2 cut(s) 195, 337
CviJI RGCY 8 cut(s) 44, 77, 103, 121, 140, 179, 226, 289
CviKI_1 RGCY 8 cut(s) 44, 77, 103, 121, 140, 179, 226, 289
CviQI GTAC 2 cut(s) 195, 337
DdeI CTNAG 2 cut(s) 99, 285
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaiI YATR 1 cut(s) 39
FaqI GGGAC 2 cut(s) 228, 344
GlaI GCGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 2 cut(s) 121, 140
HapII CCGG 2 cut(s) 116, 198
HgaI GACGC 2 cut(s) 213, 341
HhaI GCGC 1 cut(s) 283
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 3 cut(s) 4, 53, 301
HpaII CCGG 2 cut(s) 116, 198
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 2 cut(s) 61, 158
Hpy188I TCNGA 2 cut(s) 211, 372
Hpy8I GTNNAC 2 cut(s) 61, 158
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 2 cut(s) 99, 285
HpySE526I ACGT 1 cut(s) 154
HspAI GCGC 1 cut(s) 281
MaeII ACGT 1 cut(s) 154
MboII GAAGA 5 cut(s) 213, 229, 232, 280, 304
MluCI AATT 1 cut(s) 362
MluI ACGCGT 1 cut(s) 333
MnlI CCTC 6 cut(s) 41, 82, 105, 108, 137, 264
MspA1I CMGCKG 2 cut(s) 103, 307
MspI CCGG 2 cut(s) 116, 198
MspR9I CCNGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 237
NciI CCSGG 1 cut(s) 117
NlaIV GGNNCC 3 cut(s) 93, 120, 147
NmeAIII GCCGAG 1 cut(s) 252
PfeI GAWTC 3 cut(s) 4, 53, 301
PspN4I GGNNCC 3 cut(s) 93, 120, 147
PspPI GGNCC 1 cut(s) 119
PstI CTGCAG 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 2 cut(s) 196, 338
RsaNI GTAC 2 cut(s) 195, 337
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 117
SetI ASST 7 cut(s) 46, 79, 93, 105, 157, 181, 187
SfcI CTRYAG 2 cut(s) 37, 171
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 362
SsiI CCGC 2 cut(s) 107, 305
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 157
TasI AATT 1 cut(s) 362
TfiI GAWTC 3 cut(s) 4, 53, 301
TspDTI ATGAA 2 cut(s) 17, 356
XapI RAATTY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.