Rw6G027350

Ribonuclease 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003615
Physical Location & Seq
Reverse (-)
51059146 .. 51062766
3621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027350.1

Sequence Viewer

Length: 357 bp
ATGAGTAACAGTACTGCTAATCCTGGAGAACTTATCAACACAAAAGAAAATGGTCTTGATCAGCTACAGGCCCAGTTCGCCAAGAGGGAAGTTAAAGCACTGAACAAAAGATCAAAACTGTATAACGTATGTGATGCATACAAATGGAAGCACCCTGTGTATGAGTGCTGCAAAGAGGAAGGGCCGGCCCACCTGAGGATGTTCACCTTCAAGGTCGTTATTGAGATAAAAAATGAACCCTCAGAGCCAAACACAGAAGTGGAATGCTTTAGTGCACCGCAGCTGAATAAGAAAGCTGCAGTGGAACACGCCGCAGAAGGAGCGTTATGGTACTTGAAGAAGGTTGGTTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DND1_DSRM

Protein Analysis

118

Amino Acids

13.42

Weight (kDa)

7.65

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DND1_DSRM PF14709 37 - 113 5e-17 double strand RNA binding domain from DEAD END PROTEIN 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 278, 312
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 2 cut(s) 13, 332
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 2 cut(s) 211, 337
AjnI CCWGG 1 cut(s) 22
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 3 cut(s) 64, 283, 296
AluI AGCT 3 cut(s) 64, 283, 296
Alw21I GWGCWC 1 cut(s) 277
Alw44I GTGCAC 1 cut(s) 273
AoxI GGCC 3 cut(s) 69, 182, 186
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 168, 280, 296
AspS9I GGNCC 3 cut(s) 70, 182, 187
AsuHPI GGTGA 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 155, 283, 292
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 58
BfmI CTRYAG 2 cut(s) 65, 297
BisI GCNGC 4 cut(s) 169, 281, 297, 312
BlsI GCNGC 4 cut(s) 170, 282, 298, 313
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 24
BmgT120I GGNCC 3 cut(s) 70, 182, 187
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 73
Bse21I CCTNAGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 185, 255
BseNI ACTGG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 3 cut(s) 155, 283, 292
BshFI GGCC 3 cut(s) 71, 184, 188
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 195
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 3 cut(s) 71, 184, 188
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 58, 110
BspACI CCGC 2 cut(s) 278, 312
BspANI GGCC 3 cut(s) 71, 184, 188
BspCNI CTCAG 2 cut(s) 186, 254
BspMAI CTGCAG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 184
BsrI ACTGG 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 184
BssMI GATC 2 cut(s) 58, 110
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 11, 120
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 194, 241
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 2 cut(s) 61, 113
BstMBI GATC 2 cut(s) 58, 110
BstMWI GCNNNNNNNGC 2 cut(s) 77, 320
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 65, 297
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 155, 283, 292
Bsu36I CCTNAGG 1 cut(s) 194
BsuRI GGCC 3 cut(s) 71, 184, 188
BtsCI GGATG 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 98, 306
Cac8I GCNNGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 3 cut(s) 70, 182, 187
Csp6I GTAC 2 cut(s) 12, 331
CviJI RGCY 7 cut(s) 64, 71, 184, 188, 247, 283, 296
CviKI_1 RGCY 7 cut(s) 64, 71, 184, 188, 247, 283, 296
CviQI GTAC 2 cut(s) 12, 331
DdeI CTNAG 2 cut(s) 194, 241
DpnI GATC 2 cut(s) 60, 112
DpnII GATC 2 cut(s) 58, 110
DraIII CACNNNGTG 1 cut(s) 157
Eco81I CCTNAGG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 139
FaiI YATR 6 cut(s) 123, 130, 139, 162, 328, 351
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 169, 281, 297, 312
FokI GGATG 1 cut(s) 211
FseI GGCCGGCC 1 cut(s) 188
Fsp4HI GCNGC 4 cut(s) 169, 281, 297, 312
GluI GCNGC 4 cut(s) 169, 281, 297, 312
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 3 cut(s) 71, 184, 188
HapII CCGG 1 cut(s) 185
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 204, 275
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 2 cut(s) 204, 275
HpyAV CCTTC 4 cut(s) 173, 217, 311, 334
HpyCH4III ACNGT 2 cut(s) 11, 120
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 137, 171, 275, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 320
HpyF3I CTNAG 2 cut(s) 194, 241
HpySE526I ACGT 1 cut(s) 126
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 110
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 9, 36, 53, 86, 168, 198, 206
Lsp1109I GCAGC 3 cut(s) 155, 283, 292
LweI GCATC 1 cut(s) 124
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 60, 112
MboI GATC 2 cut(s) 58, 110
MboII GAAGA 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 277
MnlI CCTC 4 cut(s) 78, 169, 189, 250
Mph1103I ATGCAT 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 184
MseI TTAA 2 cut(s) 93, 355
MslI CAYNNNNRTG 2 cut(s) 142, 257
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 77, 320
NaeI GCCGGC 1 cut(s) 186
NdeII GATC 2 cut(s) 58, 110
NgoMIV GCCGGC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 139
OliI CACNNNNGTG 1 cut(s) 257
PctI GAATGC 1 cut(s) 269
PdiI GCCGGC 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 4 cut(s) 170, 282, 298, 313
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspPI GGNCC 3 cut(s) 70, 182, 187
PstI CTGCAG 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 283
RigI GGCCGGCC 1 cut(s) 188
RsaI GTAC 2 cut(s) 13, 332
RsaNI GTAC 2 cut(s) 12, 331
RseI CAYNNNNRTG 2 cut(s) 142, 257
SaqAI TTAA 2 cut(s) 93, 355
SatI GCNGC 4 cut(s) 169, 281, 297, 312
Sau3AI GATC 2 cut(s) 58, 110
Sau96I GGNCC 3 cut(s) 70, 182, 187
ScaI AGTACT 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 277
SetI ASST 8 cut(s) 66, 129, 195, 209, 216, 285, 298, 345
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 2 cut(s) 65, 297
SmiMI CAYNNNNRTG 2 cut(s) 142, 257
SsiI CCGC 2 cut(s) 278, 312
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 11, 120
TaiI ACGT 1 cut(s) 129
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 314
Tru1I TTAA 2 cut(s) 93, 355
Tru9I TTAA 2 cut(s) 93, 355
TscAI CASTG 2 cut(s) 105, 306
TseI GCWGC 3 cut(s) 168, 280, 296
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 2 cut(s) 105, 306
VneI GTGCAC 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 13
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.