Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Reverse (-)

51694981 .. 51752183

Gene Structure 57203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG315500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAATCAAAACGCTGATGGAAGAGCTTTCCTCAACATTGAAGAAGATTCGGAATCGATAAGTAGCAATGAGCCTCTACCAGATGAGGTCCCTCTGCAGCTGGCGGACACACCGGGGCCCCTTCTTAAGTCTCTGGGTTTGGAACCACCGATTCCACCAGCTGCTACTTCGTGGTCAGATAACCCTAAGCCTAGGGCCTCAGGAGGCCAGCCAAAGAAAAAGAAGACAAGCAGTACCGGTCAGAATCCACAATCAGCGAGGAGTACGAAAGTAGCTACTCCGACGAGGAAGAGAAAGCCAGCCCCAGACCCAAAGAAGTGGGTTCCGCTGGTTAAAGTACTGAACAATAGATCAAAACTGTTTAACGTATGTGATGCATACAAATGGAAGCACCCTGTGTATGAGTGCTGCAAAGAGGAAGGGCCGGCCCACCTGAGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

147

Amino Acids

16.18

Weight (kDa)

9.43

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 326
AdeI	CACNNNGTG	1 cut(s)	397
AfaI	GTAC	3 cut(s)	235, 265, 339
AfiI	CCNNNNNNNGG	1 cut(s)	435
AflII	CTTAAG	1 cut(s)	125
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	4 cut(s)	26, 100, 161, 275
AluI	AGCT	4 cut(s)	26, 100, 161, 275
Alw26I	GTCTC	1 cut(s)	135
AoxI	GGCC	5 cut(s)	116, 195, 205, 422, 426
ApaI	GGGCCC	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	97, 161, 408
AsiGI	ACCGGT	1 cut(s)	236
AspA2I	CCTAGG	1 cut(s)	191
AspS9I	GGNCC	6 cut(s)	88, 116, 117, 195, 422, 427
AsuC2I	CCSGG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	88
AvrII	CCTAGG	1 cut(s)	191
AxyI	CCTNAGG	2 cut(s)	199, 434
BaeGI	GKGCMC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	109, 148, 395
BccI	CCATC	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	3 cut(s)	98, 162, 409
BlnI	CCTAGG	1 cut(s)	191
BlsI	GCNGC	3 cut(s)	99, 163, 410
BmcAI	AGTACT	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	6 cut(s)	88, 116, 117, 195, 422, 427
BmiI	GGNNCC	6 cut(s)	90, 117, 118, 119, 144, 324
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
Bpu10I	CCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	113, 191
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse118I	RCCGGY	2 cut(s)	236, 424
Bse21I	CCTNAGG	2 cut(s)	199, 434
Bse3DI	GCAATG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	113, 191
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	213, 425
BseRI	GAGGAG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	109, 148, 395
BshFI	GGCC	5 cut(s)	118, 197, 207, 424, 428
BshTI	ACCGGT	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	113, 237, 425
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	5 cut(s)	118, 197, 207, 424, 428
Bsp120I	GGGCCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	350
BspACI	CCGC	2 cut(s)	104, 326
BspANI	GGCC	5 cut(s)	118, 197, 207, 424, 428
BspCNI	CTCAG	2 cut(s)	212, 426
BspDI	ATCGAT	1 cut(s)	56
BspLI	GGNNCC	6 cut(s)	90, 117, 118, 119, 144, 324
BspMAI	CTGCAG	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	2 cut(s)	236, 424
BssAI	RCCGGY	2 cut(s)	236, 424
BssECI	CCNNGG	2 cut(s)	113, 191
BssMI	GATC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	2 cut(s)	16, 284
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	4 cut(s)	102, 209, 300, 426
BstDEI	CTNAG	3 cut(s)	186, 199, 434
BstF5I	GGATG	1 cut(s)	444
BstKTI	GATC	1 cut(s)	353
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	109, 148, 395
BstV2I	GAAGAC	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	318
Bsu15I	ATCGAT	1 cut(s)	56
Bsu36I	CCTNAGG	2 cut(s)	199, 434
BsuRI	GGCC	5 cut(s)	118, 197, 207, 424, 428
BsuTUI	ATCGAT	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	102, 209, 300, 426
Cfr10I	RCCGGY	2 cut(s)	236, 424
Cfr13I	GGNCC	6 cut(s)	88, 116, 117, 195, 422, 427
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	234, 264, 338
CspAI	ACCGGT	1 cut(s)	236
CviQI	GTAC	3 cut(s)	234, 264, 338
DdeI	CTNAG	3 cut(s)	186, 199, 434
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
DraIII	CACNNNGTG	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	16, 284
EarI	CTCTTC	2 cut(s)	16, 284
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	88
Eco81I	CCTNAGG	2 cut(s)	199, 434
EcoO109I	RGGNCCY	4 cut(s)	88, 116, 117, 195
EcoT14I	CCWWGG	1 cut(s)	191
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	191
FaiI	YATR	3 cut(s)	370, 379, 402
FaqI	GGGAC	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	98, 162, 409
FriOI	GRGCYC	1 cut(s)	120
FseI	GGCCGGCC	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	98, 162, 409
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	3 cut(s)	98, 162, 409
HaeIII	GGCC	5 cut(s)	118, 197, 207, 424, 428
HapII	CCGG	3 cut(s)	113, 237, 425
HinfI	GANTC	5 cut(s)	4, 47, 53, 151, 244
HpaII	CCGG	3 cut(s)	113, 237, 425
Hpy188I	TCNGA	4 cut(s)	52, 178, 243, 282
Hpy188III	TCNNGA	1 cut(s)	201
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	131, 413
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	97, 377, 411
HpyF3I	CTNAG	3 cut(s)	186, 199, 434
HpySE526I	ACGT	1 cut(s)	366
KroI	GCCGGC	1 cut(s)	424
KroNI	GCCGGC	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	350
LguI	GCTCTTC	1 cut(s)	16
Lsp1109I	GCAGC	3 cut(s)	109, 148, 395
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	366
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	5 cut(s)	33, 53, 56, 235, 301
MhlI	GDGCHC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	305
Mph1103I	ATGCAT	1 cut(s)	379
MroNI	GCCGGC	1 cut(s)	424
MseI	TTAA	3 cut(s)	126, 333, 363
MslI	CAYNNNNRTG	1 cut(s)	382
MspA1I	CMGCKG	3 cut(s)	100, 161, 328
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	3 cut(s)	113, 237, 425
MspR9I	CCNGG	1 cut(s)	114
NaeI	GCCGGC	1 cut(s)	426
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	350
NgoMIV	GCCGGC	1 cut(s)	424
NlaIV	GGNNCC	6 cut(s)	90, 117, 118, 119, 144, 324
NsiI	ATGCAT	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	426
PfeI	GAWTC	5 cut(s)	4, 47, 53, 151, 244
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	99, 163, 410
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
PspN4I	GGNNCC	6 cut(s)	90, 117, 118, 119, 144, 324
PspOMI	GGGCCC	1 cut(s)	116
PspPI	GGNCC	6 cut(s)	88, 116, 117, 195, 422, 427
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	99
PvuII	CAGCTG	2 cut(s)	100, 161
RigI	GGCCGGCC	1 cut(s)	428
RsaI	GTAC	3 cut(s)	235, 265, 339
RsaNI	GTAC	3 cut(s)	234, 264, 338
RseI	CAYNNNNRTG	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	126, 333, 363
SatI	GCNGC	3 cut(s)	98, 162, 409
Sau3AI	GATC	1 cut(s)	350
Sau96I	GGNCC	6 cut(s)	88, 116, 117, 195, 422, 427
ScaI	AGTACT	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	7 cut(s)	28, 90, 102, 163, 277, 369, 435
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	2 cut(s)	104, 326
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	360
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	56
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	5 cut(s)	4, 47, 53, 151, 244
Tru1I	TTAA	3 cut(s)	126, 333, 363
Tru9I	TTAA	3 cut(s)	126, 333, 363
TseI	GCWGC	3 cut(s)	97, 161, 408
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	88
XmaJI	CCTAGG	1 cut(s)	191
XspI	CTAG	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.