Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Forward (+)

17302003 .. 17305493

Gene Structure 3491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAAGAGCTTTCCTCAACATTGAAGTCTCTCCACTGTACTGGAAATCTCTACAAATCTTATGAGCGAGTGAGGGAGTTTGGTGAAGATTCAGAATCGATAAGTAGCAATGAGCCTCTACCAGAAGAGGTCCCTCTGCAGCTGGCGGACACACCGGGGCCTTTTCTCAAGTATCTGGGTTTGGAACCACCGATTCCACCAGCTGCTACTTCATGGTCAGATAACCCTAAGCCTAGGGCCTCAGGAGGCCAGCCAAAGAAGAAGAAGACAAGCAGTACCTGTCAGAATCCACAATCAGCGAGGAGTACGAAAGTGGCTACTCCGACGAGGAAGAGAAAGCCAGCCCCAGACCCAAAGAAATGGGTTCCGCTGGCTTACAGGGAAAGAAAGAAAGATGACTTCATCTATTTTTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.65

Weight (kDa)

9.44

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	146, 368
AfaI	GTAC	3 cut(s)	40, 277, 307
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	3 cut(s)	10, 142, 203
AluI	AGCT	3 cut(s)	10, 142, 203
Alw26I	GTCTC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	279
AoxI	GGCC	3 cut(s)	158, 237, 247
ApeKI	GCWGC	2 cut(s)	139, 203
AspA2I	CCTAGG	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	130, 158, 237
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	130
AvrII	CCTAGG	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	151, 190
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	2 cut(s)	140, 204
BlnI	CCTAGG	1 cut(s)	233
BlsI	GCNGC	2 cut(s)	141, 205
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	130, 158, 237
BmiI	GGNNCC	4 cut(s)	132, 159, 186, 366
BmrFI	CCNGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	155, 233
Bse1I	ACTGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	155, 233
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	151, 190
BshFI	GGCC	3 cut(s)	160, 239, 249
BshVI	ATCGAT	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	160, 239, 249
BspACI	CCGC	2 cut(s)	146, 368
BspANI	GGCC	3 cut(s)	160, 239, 249
BspCNI	CTCAG	1 cut(s)	254
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	4 cut(s)	132, 159, 186, 366
BspMAI	CTGCAG	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	155, 233
BssT1I	CCWWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	120, 326
BstC8I	GCNNGC	4 cut(s)	144, 251, 342, 372
BstDEI	CTNAG	2 cut(s)	228, 241
BstMAI	GTCTC	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	151, 190
BstV2I	GAAGAC	1 cut(s)	272
BstXI	CCANNNNNNTGG	2 cut(s)	41, 360
Bsu15I	ATCGAT	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	160, 239, 249
BsuTUI	ATCGAT	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	4 cut(s)	144, 251, 342, 372
CaiI	CAGNNNCTG	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	130, 158, 237
ClaI	ATCGAT	1 cut(s)	98
Csp6I	GTAC	3 cut(s)	39, 276, 306
CviAII	CATG	1 cut(s)	213
CviQI	GTAC	3 cut(s)	39, 276, 306
DdeI	CTNAG	2 cut(s)	228, 241
DraI	TTTAAA	1 cut(s)	415
Eam1104I	CTCTTC	2 cut(s)	120, 326
EarI	CTCTTC	2 cut(s)	120, 326
EciI	GGCGGA	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	241
EcoO109I	RGGNCCY	3 cut(s)	130, 158, 237
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	1 cut(s)	216
FaiI	YATR	2 cut(s)	63, 214
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	140, 204
Fsp4HI	GCNGC	2 cut(s)	140, 204
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	140, 204
HaeIII	GGCC	3 cut(s)	160, 239, 249
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	1 cut(s)	216
HinfI	GANTC	4 cut(s)	89, 95, 193, 286
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	4 cut(s)	94, 220, 285, 324
Hpy188III	TCNNGA	1 cut(s)	243
Hpy99I	CGWCG	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	228, 241
Hsp92II	CATG	1 cut(s)	216
Lsp1109I	GCAGC	2 cut(s)	151, 190
MaeI	CTAG	1 cut(s)	234
MboII	GAAGA	7 cut(s)	17, 98, 137, 271, 274, 277, 343
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	9 cut(s)	25, 66, 121, 126, 144, 239, 250, 294, 321
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	3 cut(s)	142, 203, 370
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	156
NciI	CCSGG	1 cut(s)	156
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	4 cut(s)	132, 159, 186, 366
PfeI	GAWTC	4 cut(s)	89, 95, 193, 286
PkrI	GCNGC	2 cut(s)	141, 205
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
PspN4I	GGNNCC	4 cut(s)	132, 159, 186, 366
PspPI	GGNCC	3 cut(s)	130, 158, 237
PspPPI	RGGWCCY	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	279
PvuII	CAGCTG	2 cut(s)	142, 203
RsaI	GTAC	3 cut(s)	40, 277, 307
RsaNI	GTAC	3 cut(s)	39, 276, 306
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	140, 204
Sau96I	GGNCC	3 cut(s)	130, 158, 237
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	12, 132, 144, 205, 281
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SsiI	CCGC	2 cut(s)	146, 368
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	98
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	4 cut(s)	89, 95, 193, 286
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	2 cut(s)	139, 203
TspDTI	ATGAA	2 cut(s)	201, 391
TspRI	CASTG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	130
XmaJI	CCTAGG	1 cut(s)	233
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.