Rh6BG323700

Ribonuclease 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003615
Physical Location & Seq
Reverse (-)
55459211 .. 55477779
18569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG323700.1

Sequence Viewer

Length: 537 bp
ATGGGACGAGGCGACAGCAGCACTGCTGGTACAGCAAGCAATCCGCAGCAAAAGCCTAAGGCCAGCGAAAATGCGCTTGATCAGCTACAGGCCAAGTTCGCCAAGAGGGAAGTTAAAGTACTGAACAATAGATCAAAACTGTATAACGTATGTGATGCATACAAATGGAAGCACCCTGTGTATGAGTGCTGCAAAGAGGAAGGGCCGGCCCACCTGAGGATGTTCACCTTCAAGGTCGTTATTGAAATAAAAAAGGAACCCTCAGAGCCAAACACAGAAGTGGAATGCTTTAGTGCACCGCAGCTGAATAAGAAAGCTGCAGCGGAACACGCCGCAGAAGGAGCGTTATGGTACTTGAAGAAGAAGAAATCTTCATGTGTCGAAGGTCTACGCCTTTGTTTCCGAACGGCTAAAACGATACGCCGATTACGGGGAATGGAGGAACCAGGCGGACACCTCAATGAGCTCAATCCCTCCATCCCCGCCCTCTTAACTGATTCGAAGATAGAAAACTTGGCGGGAGGAAGATGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DND1_DSRM

Protein Analysis

178

Amino Acids

19.87

Weight (kDa)

9.33

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DND1_DSRM PF14709 44 - 120 6.9e-17 double strand RNA binding domain from DEAD END PROTEIN 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 388
AciI CCGC 7 cut(s) 44, 299, 323, 333, 450, 483, 518
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 3 cut(s) 31, 120, 353
AfiI CCNNNNNNNGG 2 cut(s) 216, 430
AgsI TTSAA 3 cut(s) 232, 245, 358
AjnI CCWGG 1 cut(s) 445
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 4 cut(s) 85, 304, 317, 466
AluI AGCT 4 cut(s) 85, 304, 317, 466
Alw21I GWGCWC 2 cut(s) 298, 468
Alw44I GTGCAC 1 cut(s) 294
AoxI GGCC 4 cut(s) 60, 90, 203, 207
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 6 cut(s) 18, 46, 189, 301, 317, 320
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 203, 208
AsuHPI GGTGA 1 cut(s) 217
AsuII TTCGAA 1 cut(s) 500
AxyI CCTNAGG 2 cut(s) 57, 215
BaeGI GKGCMC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 468
BarI GAAGNNNNNNTAC 2 cut(s) 102, 134
Bbv12I GWGCWC 2 cut(s) 298, 468
BbvI GCAGC 6 cut(s) 30, 58, 176, 304, 313, 332
BccI CCATC 1 cut(s) 485
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 1 cut(s) 447
BclI TGATCA 1 cut(s) 79
BfmI CTRYAG 2 cut(s) 86, 318
BisI GCNGC 7 cut(s) 19, 47, 190, 302, 318, 321, 333
BlsI GCNGC 7 cut(s) 20, 48, 191, 303, 319, 322, 334
BmcAI AGTACT 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 203, 208
BmiI GGNNCC 2 cut(s) 258, 444
BmrFI CCNGG 1 cut(s) 447
BmsI GCATC 1 cut(s) 145
Bpu14I TTCGAA 1 cut(s) 500
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 430
Bse118I RCCGGY 1 cut(s) 205
Bse21I CCTNAGG 2 cut(s) 57, 215
BseBI CCWGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 225, 477
BseLI CCNNNNNNNGG 2 cut(s) 216, 430
BseMII CTCAG 2 cut(s) 206, 276
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 6 cut(s) 30, 58, 176, 304, 313, 332
BshFI GGCC 4 cut(s) 62, 92, 205, 209
BsiHKAI GWGCWC 2 cut(s) 298, 468
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 216, 430
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 4 cut(s) 62, 92, 205, 209
Bsp119I TTCGAA 1 cut(s) 500
Bsp1286I GDGCHC 2 cut(s) 298, 468
Bsp143I GATC 2 cut(s) 79, 131
BspACI CCGC 7 cut(s) 44, 299, 323, 333, 450, 483, 518
BspANI GGCC 4 cut(s) 62, 92, 205, 209
BspCNI CTCAG 2 cut(s) 207, 275
BspLI GGNNCC 2 cut(s) 258, 444
BspMAI CTGCAG 1 cut(s) 322
BspT104I TTCGAA 1 cut(s) 500
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssMI GATC 2 cut(s) 79, 131
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 3 cut(s) 37, 64, 207
BstDEI CTNAG 3 cut(s) 57, 215, 262
BstF5I GGATG 2 cut(s) 225, 477
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 82, 134
BstMBI GATC 2 cut(s) 79, 131
BstMWI GCNNNNNNNGC 7 cut(s) 18, 32, 52, 82, 98, 329, 341
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 2 cut(s) 86, 318
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 6 cut(s) 30, 58, 176, 304, 313, 332
Bsu36I CCTNAGG 2 cut(s) 57, 215
BsuRI GGCC 4 cut(s) 62, 92, 205, 209
BtsCI GGATG 2 cut(s) 225, 477
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 37, 64, 207
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 203, 208
Csp6I GTAC 3 cut(s) 30, 119, 352
CviAII CATG 1 cut(s) 375
CviQI GTAC 3 cut(s) 30, 119, 352
DdeI CTNAG 3 cut(s) 57, 215, 262
DpnI GATC 2 cut(s) 81, 133
DpnII GATC 2 cut(s) 79, 131
DraIII CACNNNGTG 1 cut(s) 178
EciI GGCGGA 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 466
Eco81I CCTNAGG 2 cut(s) 57, 215
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 468
FaeI CATG 1 cut(s) 378
FaiI YATR 6 cut(s) 144, 151, 160, 183, 349, 376
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 374
FauI CCCGC 2 cut(s) 490, 511
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 7 cut(s) 19, 47, 190, 302, 318, 321, 333
FokI GGATG 2 cut(s) 232, 464
FriOI GRGCYC 1 cut(s) 468
FseI GGCCGGCC 1 cut(s) 209
Fsp4HI GCNGC 7 cut(s) 19, 47, 190, 302, 318, 321, 333
GlaI GCGC 1 cut(s) 75
GluI GCNGC 7 cut(s) 19, 47, 190, 302, 318, 321, 333
HaeIII GGCC 4 cut(s) 62, 92, 205, 209
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 378
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 497
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 3 cut(s) 225, 296, 389
Hpy188I TCNGA 2 cut(s) 265, 404
Hpy8I GTNNAC 3 cut(s) 225, 296, 389
HpyAV CCTTC 4 cut(s) 194, 238, 332, 377
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 158, 192, 296, 320
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 32, 52, 82, 98, 329, 341
HpyF3I CTNAG 3 cut(s) 57, 215, 262
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 378
HspAI GCGC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 131
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 8 cut(s) 12, 74, 76, 189, 219, 227, 432, 459
Lsp1109I GCAGC 6 cut(s) 30, 58, 176, 304, 313, 332
LweI GCATC 1 cut(s) 145
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 81, 133
MboI GATC 2 cut(s) 79, 131
MboII GAAGA 6 cut(s) 363, 370, 373, 376, 514, 537
MhlI GDGCHC 2 cut(s) 298, 468
MnlI CCTC 9 cut(s) 99, 190, 210, 271, 433, 467, 484, 497, 515
Mph1103I ATGCAT 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 205
MseI TTAA 2 cut(s) 114, 491
MslI CAYNNNNRTG 3 cut(s) 163, 278, 459
MspA1I CMGCKG 2 cut(s) 304, 323
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 7 cut(s) 18, 32, 52, 82, 98, 329, 341
NaeI GCCGGC 1 cut(s) 207
NdeII GATC 2 cut(s) 79, 131
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 378
NlaIV GGNNCC 2 cut(s) 258, 444
NsiI ATGCAT 1 cut(s) 160
NspV TTCGAA 1 cut(s) 500
OliI CACNNNNGTG 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 1 cut(s) 290
PdiI GCCGGC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 497
PkrI GCNGC 7 cut(s) 20, 48, 191, 303, 319, 322, 334
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 258, 444
PspPI GGNCC 2 cut(s) 203, 208
PstI CTGCAG 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 304
RigI GGCCGGCC 1 cut(s) 209
RsaI GTAC 3 cut(s) 31, 120, 353
RsaNI GTAC 3 cut(s) 30, 119, 352
RseI CAYNNNNRTG 3 cut(s) 163, 278, 459
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 114, 491
SatI GCNGC 7 cut(s) 19, 47, 190, 302, 318, 321, 333
Sau3AI GATC 2 cut(s) 79, 131
Sau96I GGNCC 2 cut(s) 203, 208
ScaI AGTACT 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 2 cut(s) 298, 468
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 2 cut(s) 86, 318
SfuI TTCGAA 1 cut(s) 500
SmiMI CAYNNNNRTG 3 cut(s) 163, 278, 459
SsiI CCGC 7 cut(s) 44, 299, 323, 333, 450, 483, 518
SstI GAGCTC 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 381, 500
TatI WGTACW 1 cut(s) 118
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 2 cut(s) 114, 491
Tru9I TTAA 2 cut(s) 114, 491
TscAI CASTG 1 cut(s) 28
TseI GCWGC 6 cut(s) 18, 46, 189, 301, 317, 320
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 1 cut(s) 28
VneI GTGCAC 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.