Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007236.1

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Reverse (-)

12188 .. 13754

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007236.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgtataagtactgtttgggttggttagtttctttgttctggccatatggttggttactttcaccccacaatttctgtaagcatgcgcttgttgcaccaacttctcacttagatcagccagtctcagtcacacaagacatcaaaggaggacccataaaaagcttgagttcagatgaactcgtcatgcggaagcattccactcaagttgagctagacatgcccattttgaggcctgccccaaatgttgcaaatatgcctcagcctgccccaaatgttacaaatatgctcaatttgaagcctgccccaaatgttgcaaatccaaatccctctaaacgaacagagctgttagaatcaaattttatagacccgactgagccaaataaaagtttgaagcaggttgaagatgcttcttttggttccataagggtttcatcaaacgataaaattgaggctaatggagagttgcttcttggactgtgttggaatgtgggtaataagaatgaagtggttaccccagttaagaatctagtaggcacccaaaaaaagaaaccagcaaaatcacatctgcttgagatttgcactaaacaaaaatgggagcctcctgtttttgagtgctgcaaggaggaagggccaagccacaggagaatgttcaccttcaaggttaatgttaaagtgaatgatcccaatacagatctcgaatgctttagttctcctcatccgaaaaagaaagctgcagccgagcaagcatctgaaggggcactgtggtacttaaagcatcttggttatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

263

Amino Acids

29.4

Weight (kDa)

8.74

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	771
AfaI	GTAC	2 cut(s)	11, 767
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	4 cut(s)	295, 391, 401, 658
AluBI	AGCT	4 cut(s)	162, 211, 343, 731
AluI	AGCT	4 cut(s)	162, 211, 343, 731
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	674
AoxI	GGCC	3 cut(s)	41, 230, 629
ApeKI	GCWGC	3 cut(s)	615, 731, 734
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	149, 629
AsuHPI	GGTGA	2 cut(s)	54, 643
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	760
BalI	TGGCCA	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	533
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	602, 718, 746
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	212, 527
BfmI	CTRYAG	1 cut(s)	732
BfuAI	ACCTGC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	3 cut(s)	616, 732, 735
BlsI	GCNGC	3 cut(s)	617, 733, 736
BmcAI	AGTACT	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 629
BmiI	GGNNCC	4 cut(s)	151, 418, 535, 597
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	3 cut(s)	394, 755, 784
BmuI	ACTGGG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	3 cut(s)	184, 186, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	119, 515
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	138, 272, 363
BseNI	ACTGG	2 cut(s)	119, 515
BseRI	GAGGAG	1 cut(s)	702
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	3 cut(s)	602, 718, 746
BshFI	GGCC	3 cut(s)	43, 232, 631
BshNI	GGYRCC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	2 cut(s)	193, 704
BsnI	GGCC	3 cut(s)	43, 232, 631
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp143I	GATC	3 cut(s)	112, 679, 691
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	3 cut(s)	43, 232, 631
BspCNI	CTCAG	3 cut(s)	137, 271, 364
BspLI	GGNNCC	4 cut(s)	151, 418, 535, 597
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	119, 515
BssMI	GATC	3 cut(s)	112, 679, 691
Bst4CI	ACNGT	3 cut(s)	14, 477, 762
BstC8I	GCNNGC	5 cut(s)	84, 234, 264, 300, 744
BstDEI	CTNAG	4 cut(s)	109, 124, 258, 372
BstEII	GGTNACC	1 cut(s)	508
BstF5I	GGATG	1 cut(s)	715
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	3 cut(s)	115, 682, 694
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	3 cut(s)	112, 679, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 217, 743
BstNSI	RCATGY	2 cut(s)	86, 220
BstPI	GGTNACC	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	1 cut(s)	760
BstV1I	GCAGC	3 cut(s)	602, 718, 746
BstX2I	RGATCY	1 cut(s)	691
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	3 cut(s)	43, 232, 631
BtsCI	GGATG	1 cut(s)	715
BtsIMutI	CAGTG	1 cut(s)	758
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	5 cut(s)	84, 234, 264, 300, 744
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	149, 629
Csp6I	GTAC	2 cut(s)	10, 766
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	3 cut(s)	83, 184, 217
CviQI	GTAC	2 cut(s)	10, 766
DdeI	CTNAG	4 cut(s)	109, 124, 258, 372
DpnI	GATC	3 cut(s)	114, 681, 693
DpnII	GATC	3 cut(s)	112, 679, 691
EaeI	YGGCCR	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	771
Eco91I	GGTNACC	1 cut(s)	508
EcoO109I	RGGNCCY	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	508
FaeI	CATG	3 cut(s)	86, 187, 220
FatI	CATG	3 cut(s)	82, 183, 216
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	616, 732, 735
FokI	GGATG	1 cut(s)	702
Fsp4HI	GCNGC	3 cut(s)	616, 732, 735
FspBI	CTAG	2 cut(s)	212, 527
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	3 cut(s)	616, 732, 735
HaeIII	GGCC	3 cut(s)	43, 232, 631
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	3 cut(s)	86, 187, 220
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	2 cut(s)	350, 523
HphI	GGTGA	2 cut(s)	54, 643
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	3 cut(s)	172, 720, 751
Hpy188III	TCNNGA	1 cut(s)	695
Hpy8I	GTNNAC	1 cut(s)	651
HpyAV	CCTTC	3 cut(s)	620, 664, 746
HpyCH4III	ACNGT	3 cut(s)	14, 477, 762
HpyCH4V	TGCA	6 cut(s)	95, 248, 314, 579, 618, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 217, 743
HpyF3I	CTNAG	4 cut(s)	109, 124, 258, 372
Hsp92II	CATG	3 cut(s)	86, 187, 220
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	112, 679, 691
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	3 cut(s)	602, 718, 746
LweI	GCATC	3 cut(s)	394, 755, 784
MaeI	CTAG	2 cut(s)	212, 527
MaeIII	GTNAC	4 cut(s)	54, 127, 274, 508
MalI	GATC	3 cut(s)	114, 681, 693
MboI	GATC	3 cut(s)	112, 679, 691
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	1 cut(s)	760
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	4 cut(s)	70, 289, 355, 444
MluNI	TGGCCA	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	8 cut(s)	140, 222, 267, 337, 442, 609, 616, 723
Mox20I	TGGCCA	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	4 cut(s)	519, 663, 669, 770
Msp20I	TGGCCA	1 cut(s)	43
Mva1269I	GAATGC	2 cut(s)	193, 704
MwoI	GCNNNNNNNGC	3 cut(s)	92, 217, 743
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	3 cut(s)	112, 679, 691
NlaIII	CATG	3 cut(s)	86, 187, 220
NlaIV	GGNNCC	4 cut(s)	151, 418, 535, 597
NmeAIII	GCCGAG	1 cut(s)	763
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	2 cut(s)	86, 220
PaeI	GCATGC	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	232
PctI	GAATGC	2 cut(s)	193, 704
PfeI	GAWTC	2 cut(s)	350, 523
PkrI	GCNGC	3 cut(s)	617, 733, 736
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	508
PspN4I	GGNNCC	4 cut(s)	151, 418, 535, 597
PspPI	GGNCC	2 cut(s)	149, 629
PspPPI	RGGWCCY	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	2 cut(s)	11, 767
RsaNI	GTAC	2 cut(s)	10, 766
SaqAI	TTAA	4 cut(s)	519, 663, 669, 770
SatI	GCNGC	3 cut(s)	616, 732, 735
Sau3AI	GATC	3 cut(s)	112, 679, 691
Sau96I	GGNCC	2 cut(s)	149, 629
ScaI	AGTACT	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	760
SetI	ASST	7 cut(s)	164, 213, 345, 399, 656, 663, 733
SfaNI	GCATC	3 cut(s)	394, 755, 784
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	3 cut(s)	163, 201, 569
SmoI	CTYRAG	3 cut(s)	163, 201, 569
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	4 cut(s)	70, 289, 355, 444
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	2 cut(s)	212, 527
StuI	AGGCCT	1 cut(s)	232
TaaI	ACNGT	3 cut(s)	14, 477, 762
TaqI	TCGA	1 cut(s)	696
TasI	AATT	4 cut(s)	70, 289, 355, 444
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	350, 523
Tru1I	TTAA	4 cut(s)	519, 663, 669, 770
Tru9I	TTAA	4 cut(s)	519, 663, 669, 770
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	615, 731, 734
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	189, 420, 516
TspRI	CASTG	1 cut(s)	765
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	2 cut(s)	86, 220
XspI	CTAG	2 cut(s)	212, 527
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.