Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Reverse (-)

46954998 .. 46959782

Gene Structure 4785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG347900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCTGAAGTTTTTGCAGACCACTGCGAACCAGATTCAGTTCCTCATGCAAAGCCTCAACGTTGTCAACTCAGACTCTGTTCACCGAGAGCTAACTCAGCATGCGCTTGTTGCACCAACTTCTCACTTAGATCAGCCAGTCTCAGTTACACAAGACATCAAAGGAGGACCCATAAAAAGCTTGAGTTCAGATGAACTCGTCATGCGGAAGCATTCCACTCAAGTTGAGCTAGACTTGCCCATTTTGAGGCCTGCCCCAAATGTTACAAATATGCTCAATTTGAAGCCTGCCCCAAATGTTGCAAATCCAAATCCCTCTAAAGGAACAGAGTTGTTAGAATCAAATTTTATAGACCCTACTGAGCCAAATAAAAGTTTGAAGCAGGTTGAAGATGCTTCTTTTGGTTCCATAAGGGTTTCATCAAACGATAAAATTGAGGCTAATGGAGAGTTGCTTCTTGGACTGTGTTGGAATGTGGGGAATAAGAATGAAGTGGTTACCCCAATTAAGAATCTAGTAGGCACCCAAAAAAAGAAACCAGCAAAATCACATCTGCTTGAGATTTGCATTAAACAAAAATGGGAGCCTCCTGTTTTTGAGTGCTGCAAGGAGGAAGGGCCAAGCCACAGGAGAATGTTCACCTTCAAGGTTAATGTTAAAGTGAATGATCCCAATACAGATCTCGAATGCTTTAGTTCTCCTCATCCGAAAAAGAAAGCTGCAGCCGAGCAAGCATCTGAAGGGGCACTGTGGTACTTAAAGCATCTTGGTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

259

Amino Acids

28.78

Weight (kDa)

8.21

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	181 - 254	4.8e-15	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	181 - 250	5.7e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	521
AciI	CCGC	1 cut(s)	205
AclI	AACGTT	1 cut(s)	60
AclWI	GGATC	1 cut(s)	662
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	2 cut(s)	26, 759
AfaI	GTAC	1 cut(s)	755
AfiI	CCNNNNNNNGG	2 cut(s)	246, 320
AgsI	TTSAA	4 cut(s)	283, 379, 389, 646
AluBI	AGCT	4 cut(s)	91, 180, 229, 719
AluI	AGCT	4 cut(s)	91, 180, 229, 719
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	662
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	248, 617
ApeKI	GCWGC	3 cut(s)	603, 719, 722
ApoI	RAATTY	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	167, 617
AsuHPI	GGTGA	2 cut(s)	74, 631
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	590, 706, 734
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	230, 515
BfmI	CTRYAG	1 cut(s)	720
BfuAI	ACCTGC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	3 cut(s)	604, 720, 723
BlsI	GCNGC	3 cut(s)	605, 721, 724
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	167, 617
BmiI	GGNNCC	4 cut(s)	169, 406, 523, 585
BmsI	GCATC	3 cut(s)	382, 743, 772
BpuEI	CTTGAG	3 cut(s)	202, 204, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 320
Bse1I	ACTGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	2 cut(s)	246, 320
BseMII	CTCAG	4 cut(s)	84, 110, 156, 351
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	690
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	3 cut(s)	590, 706, 734
BshFI	GGCC	2 cut(s)	250, 619
BshNI	GGYRCC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	246, 320
BsmAI	GTCTC	1 cut(s)	145
BsmI	GAATGC	2 cut(s)	211, 692
BsnI	GGCC	2 cut(s)	250, 619
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	3 cut(s)	130, 667, 679
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	2 cut(s)	250, 619
BspCNI	CTCAG	4 cut(s)	83, 109, 155, 352
BspLI	GGNNCC	4 cut(s)	169, 406, 523, 585
BspMAI	CTGCAG	1 cut(s)	724
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	130, 667, 679
Bst4CI	ACNGT	2 cut(s)	465, 750
BstC8I	GCNNGC	4 cut(s)	102, 252, 288, 732
BstDEI	CTNAG	5 cut(s)	70, 96, 127, 142, 360
BstEII	GGTNACC	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	3 cut(s)	133, 670, 682
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	130, 667, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 110, 235, 731
BstNSI	RCATGY	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	720
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	3 cut(s)	590, 706, 734
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuRI	GGCC	2 cut(s)	250, 619
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 746
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	4 cut(s)	102, 252, 288, 732
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	167, 617
Csp6I	GTAC	1 cut(s)	754
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	3 cut(s)	46, 101, 202
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	5 cut(s)	70, 96, 127, 142, 360
DpnI	GATC	3 cut(s)	132, 669, 681
DpnII	GATC	3 cut(s)	130, 667, 679
Eco147I	AGGCCT	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	26, 759
Eco91I	GGTNACC	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	496
FaeI	CATG	3 cut(s)	49, 104, 205
FaiI	YATR	7 cut(s)	47, 102, 173, 203, 272, 350, 410
FatI	CATG	3 cut(s)	45, 100, 201
Fnu4HI	GCNGC	3 cut(s)	604, 720, 723
FokI	GGATG	1 cut(s)	690
Fsp4HI	GCNGC	3 cut(s)	604, 720, 723
FspBI	CTAG	2 cut(s)	230, 515
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	604, 720, 723
HaeIII	GGCC	2 cut(s)	250, 619
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	49, 104, 205
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	4 cut(s)	34, 74, 338, 511
HphI	GGTGA	2 cut(s)	74, 631
Hpy166II	GTNNAC	3 cut(s)	67, 82, 639
Hpy188I	TCNGA	4 cut(s)	73, 190, 708, 739
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	3 cut(s)	67, 82, 639
HpyAV	CCTTC	3 cut(s)	608, 652, 734
HpyCH4III	ACNGT	2 cut(s)	465, 750
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	7 cut(s)	16, 49, 113, 302, 567, 606, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 110, 235, 731
HpyF3I	CTNAG	5 cut(s)	70, 96, 127, 142, 360
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	49, 104, 205
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	130, 667, 679
LmnI	GCTCC	1 cut(s)	583
LpnPI	CCDG	8 cut(s)	44, 150, 264, 300, 368, 552, 603, 613
Lsp1109I	GCAGC	3 cut(s)	590, 706, 734
LweI	GCATC	3 cut(s)	382, 743, 772
MaeI	CTAG	2 cut(s)	230, 515
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	145, 262, 496
MalI	GATC	3 cut(s)	132, 669, 681
MboI	GATC	3 cut(s)	130, 667, 679
MboII	GAAGA	1 cut(s)	401
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	4 cut(s)	277, 343, 432, 504
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	9 cut(s)	53, 65, 158, 240, 325, 430, 597, 604, 711
MseI	TTAA	5 cut(s)	507, 570, 651, 657, 758
Mva1269I	GAATGC	2 cut(s)	211, 692
MwoI	GCNNNNNNNGC	4 cut(s)	97, 110, 235, 731
NdeII	GATC	3 cut(s)	130, 667, 679
NlaIII	CATG	3 cut(s)	49, 104, 205
NlaIV	GGNNCC	4 cut(s)	169, 406, 523, 585
NmeAIII	GCCGAG	1 cut(s)	751
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	2 cut(s)	211, 692
PfeI	GAWTC	3 cut(s)	34, 338, 511
PkrI	GCNGC	3 cut(s)	605, 721, 724
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	167
PspEI	GGTNACC	1 cut(s)	496
PspN4I	GGNNCC	4 cut(s)	169, 406, 523, 585
PspPI	GGNCC	2 cut(s)	167, 617
PspPPI	RGGWCCY	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
SaqAI	TTAA	5 cut(s)	507, 570, 651, 657, 758
SatI	GCNGC	3 cut(s)	604, 720, 723
Sau3AI	GATC	3 cut(s)	130, 667, 679
Sau96I	GGNCC	2 cut(s)	167, 617
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	748
SetI	ASST	8 cut(s)	63, 93, 182, 231, 387, 644, 651, 721
SfaNI	GCATC	3 cut(s)	382, 743, 772
SfcI	CTRYAG	1 cut(s)	720
SinI	GGWCC	1 cut(s)	167
SmlI	CTYRAG	3 cut(s)	181, 219, 557
SmoI	CTYRAG	3 cut(s)	181, 219, 557
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	4 cut(s)	277, 343, 432, 504
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	2 cut(s)	230, 515
StuI	AGGCCT	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	465, 750
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	684
TasI	AATT	4 cut(s)	277, 343, 432, 504
TfiI	GAWTC	3 cut(s)	34, 338, 511
Tru1I	TTAA	5 cut(s)	507, 570, 651, 657, 758
Tru9I	TTAA	5 cut(s)	507, 570, 651, 657, 758
TscAI	CASTG	2 cut(s)	28, 753
TseI	GCWGC	3 cut(s)	603, 719, 722
TspDTI	ATGAA	3 cut(s)	207, 408, 504
TspRI	CASTG	2 cut(s)	28, 753
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	2 cut(s)	230, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.