RLG00000019651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019020
Physical Location & Seq
Forward (+)
54920804 .. 54921284
481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019651

Sequence Viewer

Length: 375 bp
ATGATGAGAGTCGGGCTAGGGTTTCTTGGCGGCGACTCGACAAAATTAGTTGGTAGAGGTGCCTCACTTCCTCTCTTCGTCTTCTTGGTGGGCGACATCACCTCTCAATGGCGTGGTCTTCATCTATGGGGATTGGTATCCCTTTTCCTCTATTCGATTTCGATCTGTGGCGGCATCGAGATTATCTCGTGTCAGCCGGGATTGGGGGCCGCGTCGAATCATGACATCTGCTACGCGCCCATAGGAGGTGGGCGGAGGCGGGCTTCATGTGTGCATCCGGCAAGCGTGGTAGCTTGGGGTAAAGCTTGGACGGTTGGTGGTGAACTTGGCTTGAGCCCTAGGTCGGATCTGCTTGAGACGGTCAGAGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

12.98

Weight (kDa)

8.88

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019020)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0031291
rosa_laevigata RLG00000019651 RLG00000033298
rosa_rugosa Rorug05G0123800
rosa_samantha Rh5AG217100 Rh5BG216800 Rh5CG240400 Rh5DG221900
rosa_wichuraiana Rw5G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 2 cut(s) 212, 236
AciI CCGC 5 cut(s) 30, 171, 210, 253, 259
AclWI GGATC 1 cut(s) 354
AfiI CCNNNNNNNGG 4 cut(s) 108, 203, 245, 343
AluBI AGCT 2 cut(s) 293, 305
AluI AGCT 2 cut(s) 293, 305
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 1 cut(s) 354
AoxI GGCC 1 cut(s) 207
AspA2I CCTAGG 1 cut(s) 338
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 91, 332
AvrII CCTAGG 1 cut(s) 338
BanI GGYRCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 338
BauI CACGAG 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 73, 110
BciVI GTATCC 1 cut(s) 148
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 17, 339
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 3 cut(s) 31, 172, 210
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 3 cut(s) 32, 173, 211
Bme1390I CCNGG 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 61, 208
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 183, 283
BpiI GAAGAC 2 cut(s) 73, 110
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpuEI CTTGAG 2 cut(s) 352, 374
BpuMI CCSGG 1 cut(s) 198
BsaBI GATNNNNATC 2 cut(s) 136, 161
BsaJI CCNNGG 1 cut(s) 338
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 203, 245, 343
Bse8I GATNNNNATC 2 cut(s) 136, 161
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 2 cut(s) 136, 161
BseLI CCNNNNNNNGG 4 cut(s) 108, 203, 245, 343
Bsh1236I CGCG 2 cut(s) 212, 236
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 197, 278
BslI CCNNNNNNNGG 4 cut(s) 108, 203, 245, 343
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 2 cut(s) 162, 346
BspACI CCGC 5 cut(s) 30, 171, 210, 253, 259
BspANI GGCC 1 cut(s) 209
BspFNI CGCG 2 cut(s) 212, 236
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 61, 208
BspPI GGATC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 2 cut(s) 162, 346
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 338
Bst2BI CACGAG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 313, 361
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 261, 283
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 2 cut(s) 212, 236
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 2 cut(s) 165, 349
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 2 cut(s) 162, 346
BstSCI CCNGG 1 cut(s) 196
BstUI CGCG 2 cut(s) 212, 236
BstV2I GAAGAC 2 cut(s) 73, 110
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 261, 283
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 207
CseI GACGC 1 cut(s) 201
CviAII CATG 2 cut(s) 221, 267
CviJI RGCY 8 cut(s) 16, 196, 209, 263, 293, 305, 330, 336
CviKI_1 RGCY 8 cut(s) 16, 196, 209, 263, 293, 305, 330, 336
DpnI GATC 2 cut(s) 164, 348
DpnII GATC 2 cut(s) 162, 346
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 2 cut(s) 224, 270
FaiI YATR 4 cut(s) 127, 222, 242, 268
FatI CATG 2 cut(s) 220, 266
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 31, 172, 210
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 3 cut(s) 31, 172, 210
FspBI CTAG 2 cut(s) 17, 339
GlaI GCGC 1 cut(s) 237
GluI GCNGC 3 cut(s) 31, 172, 210
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 197, 278
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 224, 270
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 3 cut(s) 9, 35, 217
HpaII CCGG 2 cut(s) 197, 278
HphI GGTGA 2 cut(s) 91, 332
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 346, 365
Hpy188III TCNNGA 2 cut(s) 178, 221
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 313, 361
HpyCH4V TGCA 1 cut(s) 274
Hsp92II CATG 2 cut(s) 224, 270
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 2 cut(s) 162, 346
LpnPI CCDG 2 cut(s) 210, 291
LweI GCATC 2 cut(s) 183, 283
MaeI CTAG 2 cut(s) 17, 339
MalI GATC 2 cut(s) 164, 348
MboI GATC 2 cut(s) 162, 346
MboII GAAGA 3 cut(s) 67, 73, 110
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 1 cut(s) 44
MlyI GAGTC 2 cut(s) 18, 29
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 8 cut(s) 50, 73, 81, 112, 158, 239, 249, 359
MspI CCGG 2 cut(s) 197, 278
MspR9I CCNGG 1 cut(s) 198
MvnI CGCG 2 cut(s) 212, 236
NciI CCSGG 1 cut(s) 198
NdeII GATC 2 cut(s) 162, 346
NlaIII CATG 2 cut(s) 224, 270
NlaIV GGNNCC 2 cut(s) 61, 208
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 3 cut(s) 32, 173, 211
PleI GAGTC 2 cut(s) 17, 29
PpsI GAGTC 2 cut(s) 17, 29
PspN4I GGNNCC 2 cut(s) 61, 208
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 346
SatI GCNGC 3 cut(s) 31, 172, 210
Sau3AI GATC 2 cut(s) 162, 346
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 2 cut(s) 18, 29
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 338
SetI ASST 6 cut(s) 61, 104, 250, 295, 307, 344
SfaNI GCATC 2 cut(s) 183, 283
SmlI CTYRAG 2 cut(s) 331, 353
SmoI CTYRAG 2 cut(s) 331, 353
Sse9I AATT 1 cut(s) 44
SsiI CCGC 5 cut(s) 30, 171, 210, 253, 259
SspMI CTAG 2 cut(s) 17, 339
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 2 cut(s) 313, 361
TaqI TCGA 5 cut(s) 38, 155, 161, 177, 215
TasI AATT 1 cut(s) 44
TauI GCSGC 3 cut(s) 33, 174, 212
TfiI GAWTC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 110, 255
XmaJI CCTAGG 1 cut(s) 338
XspI CTAG 2 cut(s) 17, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.