Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0019020

Physical Location & Seq

Genomic Coordinates Forward (+)

25885526 .. 25886952

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAATACACTACAGACACAATTGATCAATTTATATGGGTTTCCCTGCGAGGACATTGACATCCCAATTGTGCGAGCTGAACGACGTCGTCTTAGAAATATATTGGACCGAAATATACAAGTTATGCATTCAGCAATGCTTGCTCAAAACTCATTACCTGTCAAACCGTCAGATGGTCAGAGTGATTTAGTTGTTAATGTTGGAGAATCTACATCTTCAACCAATGTTCCTTCGCATGCCATGTATATGGATGTGAGTGCACCATTTGCATTGGTTGATGAGATAGCTGATGCATCACCAGCAACGGAGGGTGGCATACAACTTGGAGATCAGATTGTGAAATATGGCAATGTGGAAAATGGTGACAGTTTGTTGTGGAAACTTGCTTCCGAGGCTCAAACAAATCTGGGTTGTGCTGTGCCTGTTATGGTCTTAAGGCAAGGTGCCCAATTCAACTTAATGGTGACACCTAGAACATGGCAAGGCAGGGGTCTATTGGGGTGTCATTTCCAGATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2

Protein Analysis

173

Amino Acids

18.91

Weight (kDa)

5.05

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019020)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0031291
rosa_laevigata	RLG00000019651 RLG00000033298
rosa_rugosa	Rorug05G0123800
rosa_samantha	Rh5AG217100 Rh5BG216800 Rh5CG240400 Rh5DG221900
rosa_wichuraiana	Rw5G019850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	443
AcyI	GRCGYC	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflII	CTTAAG	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	219, 454
AluBI	AGCT	2 cut(s)	77, 287
AluI	AGCT	2 cut(s)	77, 287
Alw21I	GWGCWC	1 cut(s)	262
Alw44I	GTGCAC	1 cut(s)	258
ApaLI	GTGCAC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	288, 374, 475
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	2 cut(s)	262, 448
BanI	GGYRCC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	262
BccI	CCATC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	24
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	445
BmsI	GCATC	2 cut(s)	280, 302
BsaHI	GRCGYC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse3DI	GCAATG	2 cut(s)	141, 355
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	60, 256
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	2 cut(s)	141, 355
BseSI	GKGCMC	2 cut(s)	262, 448
BshNI	GGYRCC	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	262, 448
Bsp143I	GATC	2 cut(s)	24, 328
BspLI	GGNNCC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	443
BspTI	CTTAAG	1 cut(s)	433
BsrDI	GCAATG	2 cut(s)	141, 355
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	2 cut(s)	24, 328
BssNI	GRCGYC	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	168, 368
BstACI	GRCGYC	1 cut(s)	85
BstAFI	CTTAAG	1 cut(s)	433
BstAPI	GCANNNNNTGC	2 cut(s)	140, 266
BstC8I	GCNNGC	3 cut(s)	75, 141, 237
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	60, 256
BstKTI	GATC	2 cut(s)	27, 331
BstMBI	GATC	2 cut(s)	24, 328
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 266, 299, 392
BstNSI	RCATGY	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	11
BstSLI	GKGCMC	2 cut(s)	262, 448
BstXI	CCANNNNNNTGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	60, 256
Cac8I	GCNNGC	3 cut(s)	75, 141, 237
Cfr13I	GGNCC	1 cut(s)	106
CviAII	CATG	3 cut(s)	236, 241, 477
CviJI	RGCY	3 cut(s)	77, 287, 395
CviKI_1	RGCY	3 cut(s)	77, 287, 395
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	2 cut(s)	26, 330
DpnII	GATC	2 cut(s)	24, 328
Eco47I	GGWCC	1 cut(s)	106
EcoT22I	ATGCAT	2 cut(s)	129, 295
FaeI	CATG	3 cut(s)	239, 244, 480
FatI	CATG	3 cut(s)	235, 240, 476
FbaI	TGATCA	1 cut(s)	24
FokI	GGATG	2 cut(s)	47, 263
FspBI	CTAG	1 cut(s)	471
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	239, 244, 480
HinfI	GANTC	1 cut(s)	206
HphI	GGTGA	3 cut(s)	288, 374, 475
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	4 cut(s)	172, 180, 333, 391
Hpy188III	TCNNGA	1 cut(s)	511
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	2 cut(s)	87, 90
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	168, 368
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	4 cut(s)	127, 260, 269, 293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 266, 299, 392
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	85
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	3 cut(s)	239, 244, 480
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	24, 328
LpnPI	CCDG	6 cut(s)	58, 171, 312, 392, 435, 472
LweI	GCATC	2 cut(s)	280, 302
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	362, 463
MalI	GATC	2 cut(s)	26, 330
MboI	GATC	2 cut(s)	24, 328
MboII	GAAGA	1 cut(s)	207
MfeI	CAATTG	2 cut(s)	20, 66
MhlI	GDGCHC	2 cut(s)	262, 448
MluCI	AATT	4 cut(s)	20, 28, 66, 449
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	3 cut(s)	43, 301, 385
Mph1103I	ATGCAT	2 cut(s)	129, 295
MseI	TTAA	3 cut(s)	195, 434, 458
MslI	CAYNNNNRTG	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	433
MunI	CAATTG	2 cut(s)	20, 66
Mva1269I	GAATGC	1 cut(s)	127
MwoI	GCNNNNNNNGC	4 cut(s)	140, 266, 299, 392
NdeII	GATC	2 cut(s)	24, 328
NlaIII	CATG	3 cut(s)	239, 244, 480
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	2 cut(s)	362, 463
NsiI	ATGCAT	2 cut(s)	129, 295
NspI	RCATGY	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	206
PflFI	GACNNNGTC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	195, 434, 458
Sau3AI	GATC	2 cut(s)	24, 328
Sau96I	GGNCC	1 cut(s)	106
SduI	GDGCHC	2 cut(s)	262, 448
SetI	ASST	6 cut(s)	79, 88, 160, 289, 445, 472
SfaNI	GCATC	2 cut(s)	280, 302
SfcI	CTRYAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	4 cut(s)	20, 28, 66, 449
SspMI	CTAG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	168, 368
TaiI	ACGT	1 cut(s)	88
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	20, 28, 66, 449
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	3 cut(s)	195, 434, 458
Tru9I	TTAA	3 cut(s)	195, 434, 458
TseFI	GTSAC	2 cut(s)	362, 463
Tsp45I	GTSAC	2 cut(s)	362, 463
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	320
Tth111I	GACNNNGTC	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	106
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	1 cut(s)	471
ZraI	GACGTC	1 cut(s)	86
Zsp2I	ATGCAT	2 cut(s)	129, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.