Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018979

Physical Location & Seq

Genomic Coordinates Reverse (-)

61082123 .. 61085424

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTAGCTTATGCTGCAGGCATCCCCTTGGCCCTTAAAATTTGGAGTTCCTTATCCCATAAACTTTCATGGGACAAGATGACAAAGTTTCTCAACGAAGACATGGGGAGCATTTATAGAGTGAGTTATGATGTCTTGAGAAAAAATGAGAAGGAAATATTTCTTGACATTGCTTGTTTCCACAAAGGGAAGAAAATAAATGATGTAAGAGGACATTTAAATTGCCGTAGTTTATCTGTGGATAGTGGAATTGATGATCTTATTGACGCAGACATCTCTTCTATCAAGCAAGGCTCTCAACTGAAACCGCATCACCTAGCCTCTCATCAAGATTCCGGGTTAGAAATCGAAGCCTCAATCAAGCAAGGCTGCTTGGAATTTGATTCGGTGCTGATGCTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

135

Amino Acids

15.02

Weight (kDa)

6.58

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_ROQ1	PF23282	48 - 116	2e-10	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018979)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141291 RchiOBHm_Chr6g0273411
rosa_laevigata	RLG00000001783 RLG00000001792 RLG00000020110
rosa_samantha	Rh3BG029400 Rh3CG028200 Rh3DG029100 Rh5DG259500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	39, 377
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	14, 369
ApoI	RAATTY	2 cut(s)	39, 377
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	337
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	15, 370
BlsI	GCNGC	2 cut(s)	16, 371
Bme1390I	CCNGG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	30, 319, 384
BpiI	GAAGAC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	275
CviAII	CATG	2 cut(s)	69, 103
CviJI	RGCY	6 cut(s)	8, 32, 294, 320, 353, 369
CviKI_1	RGCY	6 cut(s)	8, 32, 294, 320, 353, 369
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraI	TTTAAA	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	72, 106
FaiI	YATR	6 cut(s)	12, 60, 70, 104, 117, 129
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	68, 102
Fnu4HI	GCNGC	2 cut(s)	15, 370
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	15, 370
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	15, 370
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	72, 106
HinfI	GANTC	2 cut(s)	332, 383
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	305
Hpy188III	TCNNGA	3 cut(s)	136, 164, 329
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	72, 106
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	2 cut(s)	3, 349
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	3 cut(s)	30, 319, 384
MaeI	CTAG	1 cut(s)	317
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	110, 202, 270
MluCI	AATT	4 cut(s)	39, 220, 249, 377
MnlI	CCTC	3 cut(s)	203, 331, 364
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	2 cut(s)	36, 218
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	72, 106
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	332, 383
PkrI	GCNGC	2 cut(s)	16, 371
PspPI	GGNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	36, 218
SatI	GCNGC	2 cut(s)	15, 370
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	337
SetI	ASST	2 cut(s)	10, 318
SfaNI	GCATC	3 cut(s)	30, 319, 384
SfcI	CTRYAG	1 cut(s)	15
SmiI	ATTTAAAT	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	4 cut(s)	39, 220, 249, 377
SsiI	CCGC	1 cut(s)	308
SspI	AATATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	27
SwaI	ATTTAAAT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	348
TasI	AATT	4 cut(s)	39, 220, 249, 377
TfiI	GAWTC	2 cut(s)	332, 383
Tru1I	TTAA	2 cut(s)	36, 218
Tru9I	TTAA	2 cut(s)	36, 218
TseI	GCWGC	2 cut(s)	14, 369
TspDTI	ATGAA	1 cut(s)	57
XapI	RAATTY	2 cut(s)	39, 377
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.