Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018979

Physical Location & Seq

Genomic Coordinates Reverse (-)

30920874 .. 30951602

Gene Structure 30729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGGTGAACCCTAACTTCGATCAAGGTTTCGACCGTCGAGCTTCTTGGCTCATGTTGAGTGTACCCAATTCGCTTCTCTCTTCTCGGCATGGCAACGGCAATCTAGGTATGCTCGTGGCGTTGTACTTTCTGGCGATAACCATGGTGAGACAGATGATTCTTTTGGGCAAAGGTTGTGTGGTGTGGTTGGTGGCAGTTCCAAATTACTTCAACGGAGCAACGAACGCATCCCATCCCATCAAGCAAGCCTCGATCTCCCTCTGCTCGATCTCCCTCTCACAGAACCCATCCAGTCGCCGCCACATCTCGCGCATCCCATTCGATCTCCCTCTAATCACAGAACCCATCCAGTCGCCGCCGCATCTCGATCTCCCTCTAATCACAGAACCCATCAGTCGCCGCATCTCGATCTTGGCCTCACTTGCATCTCATCAGGATTTCGGAAGTGAAATTGAAGCCTCAATCAAGCAAGTTTCCCAGCACAGGAAGCTAGCTAGCAGGTGGTTTGATACAACTAGGGAAATGTTGAAAAATGGATGTGAGCTCTCAAACAGGACAACCCAAAAAGCAGAAGTTATATGGTTTCATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.17

Weight (kDa)

9.65

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018979)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141291 RchiOBHm_Chr6g0273411
rosa_laevigata	RLG00000001783 RLG00000001792 RLG00000020110
rosa_samantha	Rh3BG029400 Rh3CG028200 Rh3DG029100 Rh5DG259500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	492
Acc36I	ACCTGC	1 cut(s)	492
AccII	CGCG	1 cut(s)	313
AciI	CCGC	5 cut(s)	5, 301, 359, 362, 403
AfaI	GTAC	2 cut(s)	66, 128
AfiI	CCNNNNNNNGG	1 cut(s)	486
AgsI	TTSAA	3 cut(s)	214, 458, 532
AluBI	AGCT	4 cut(s)	44, 493, 497, 547
AluI	AGCT	4 cut(s)	44, 493, 497, 547
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	19, 160
AsuNHI	GCTAGC	2 cut(s)	493, 497
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	549
BccI	CCATC	5 cut(s)	243, 248, 298, 356, 401
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	4 cut(s)	107, 494, 498, 519
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	4 cut(s)	301, 359, 362, 403
BlsI	GCNGC	4 cut(s)	302, 360, 363, 404
BmsI	GCATC	5 cut(s)	239, 324, 373, 414, 437
BmtI	GCTAGC	2 cut(s)	497, 501
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	2 cut(s)	294, 352
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	6 cut(s)	230, 235, 290, 315, 348, 545
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	294, 352
BseYI	CCCAGC	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	6 cut(s)	22, 255, 270, 325, 370, 411
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	5 cut(s)	5, 301, 359, 362, 403
BspANI	GGCC	1 cut(s)	419
BspFNI	CGCG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	492
BspOI	GCTAGC	2 cut(s)	497, 501
BsrI	ACTGG	2 cut(s)	294, 352
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	6 cut(s)	22, 255, 270, 325, 370, 411
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	249, 495, 499
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	6 cut(s)	230, 235, 290, 315, 348, 545
BstFNI	CGCG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	6 cut(s)	25, 258, 273, 328, 373, 414
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	6 cut(s)	22, 255, 270, 325, 370, 411
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 425, 490
BstUI	CGCG	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	6 cut(s)	230, 235, 290, 315, 348, 545
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	249, 495, 499
CfoI	GCGC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	65, 127
CviAII	CATG	3 cut(s)	55, 92, 145
CviJI	RGCY	8 cut(s)	44, 52, 251, 419, 461, 493, 497, 547
CviKI_1	RGCY	8 cut(s)	44, 52, 251, 419, 461, 493, 497, 547
CviQI	GTAC	2 cut(s)	65, 127
DpnI	GATC	6 cut(s)	24, 257, 272, 327, 372, 413
DpnII	GATC	6 cut(s)	22, 255, 270, 325, 370, 411
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	549
Eco53kI	GAGCTC	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	58, 95, 148
FaiI	YATR	6 cut(s)	56, 93, 113, 146, 581, 583
FatI	CATG	3 cut(s)	54, 91, 144
Fnu4HI	GCNGC	4 cut(s)	301, 359, 362, 403
FokI	GGATG	6 cut(s)	217, 222, 277, 302, 335, 552
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	4 cut(s)	301, 359, 362, 403
FspBI	CTAG	4 cut(s)	107, 494, 498, 519
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	4 cut(s)	301, 359, 362, 403
GsaI	CCCAGC	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	58, 95, 148
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	160
HphI	GGTGA	2 cut(s)	19, 160
Hpy166II	GTNNAC	2 cut(s)	10, 65
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	3 cut(s)	368, 409, 437
Hpy8I	GTNNAC	2 cut(s)	10, 65
Hpy99I	CGWCG	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 425, 490
Hsp92II	CATG	3 cut(s)	58, 95, 148
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	6 cut(s)	22, 255, 270, 325, 370, 411
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	8 cut(s)	119, 307, 365, 422, 472, 487, 494, 541
LweI	GCATC	5 cut(s)	239, 324, 373, 414, 437
MaeI	CTAG	4 cut(s)	107, 494, 498, 519
MalI	GATC	6 cut(s)	24, 257, 272, 327, 372, 413
MboI	GATC	6 cut(s)	22, 255, 270, 325, 370, 411
MboII	GAAGA	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	3 cut(s)	70, 205, 453
MnlI	CCTC	7 cut(s)	262, 272, 287, 342, 387, 430, 472
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	227, 425, 490
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	6 cut(s)	22, 255, 270, 325, 370, 411
NheI	GCTAGC	2 cut(s)	493, 497
NlaIII	CATG	3 cut(s)	58, 95, 148
NmeAIII	GCCGAG	1 cut(s)	67
PaqCI	CACCTGC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	302, 360, 363, 404
Psp124BI	GAGCTC	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	480
RsaI	GTAC	2 cut(s)	66, 128
RsaNI	GTAC	2 cut(s)	65, 127
SacI	GAGCTC	1 cut(s)	549
SatI	GCNGC	4 cut(s)	301, 359, 362, 403
Sau3AI	GATC	6 cut(s)	22, 255, 270, 325, 370, 411
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	8 cut(s)	31, 46, 112, 178, 495, 499, 506, 549
SfaNI	GCATC	5 cut(s)	239, 324, 373, 414, 437
Sse9I	AATT	3 cut(s)	70, 205, 453
SsiI	CCGC	5 cut(s)	5, 301, 359, 362, 403
SspMI	CTAG	4 cut(s)	107, 494, 498, 519
SstI	GAGCTC	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	8 cut(s)	21, 33, 40, 254, 269, 324, 369, 410
TasI	AATT	3 cut(s)	70, 205, 453
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	4 cut(s)	303, 361, 364, 405
TfiI	GAWTC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	1 cut(s)	231
XspI	CTAG	4 cut(s)	107, 494, 498, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.