Rh3BG029400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018979
Physical Location & Seq
Forward (+)
1943953 .. 1944252
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG029400.1

Sequence Viewer

Length: 300 bp
ATGGTGCACCATGGCTTTGCAGGGATGGTGGTTGTCCGAGTCTGCAGCGGCTGGGCGGTGCTTCCGATTCGGTGTCTTCTCTCTTCCCAGCGCATCGACGGGGATCCTTGTCTGTCCATGGCGCTGGGGTATTCCGCGATCCCCATGGCGAGACAAACGACTGGTTTGGGCACAAGGCTCGCAATGTGGCTGGTGGCGGTACCCAGAATACGTCGGCAACGCGACGGTTTGCCATTCCCAGCTATTTGGGTGTCCACAGCTTTTCCATATGGGCAGGTGTTAAGGGGCCCAAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.79

Weight (kDa)

11.12

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018979)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0141291 RchiOBHm_Chr6g0273411
rosa_laevigata RLG00000001783 RLG00000001792 RLG00000020110
rosa_samantha Rh3BG029400 Rh3CG028200 Rh3DG029100 Rh5DG259500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 265
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 199
AccII CGCG 2 cut(s) 137, 222
AciI CCGC 4 cut(s) 48, 56, 135, 197
AclWI GGATC 3 cut(s) 98, 111, 133
AfaI GTAC 1 cut(s) 201
AluBI AGCT 2 cut(s) 242, 260
AluI AGCT 2 cut(s) 242, 260
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 145
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 3 cut(s) 98, 111, 133
AlwNI CAGNNNCTG 1 cut(s) 51
AoxI GGCC 1 cut(s) 286
ApaI GGGCCC 1 cut(s) 290
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 199
AspLEI GCGC 2 cut(s) 93, 124
AspS9I GGNCC 2 cut(s) 286, 287
BaeGI GKGCMC 3 cut(s) 9, 173, 290
BamHI GGATCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BcoDI GTCTC 1 cut(s) 145
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 2 cut(s) 46, 49
BlsI GCNGC 2 cut(s) 47, 50
BmgT120I GGNCC 2 cut(s) 286, 287
BmiI GGNNCC 4 cut(s) 105, 201, 287, 288
BmsI GCATC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 10, 117, 144
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 10, 117, 144
BseGI GGATG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 166
BseSI GKGCMC 3 cut(s) 9, 173, 290
BseXI GCAGC 1 cut(s) 57
BseYI CCCAGC 4 cut(s) 51, 87, 124, 238
Bsh1236I CGCG 2 cut(s) 137, 222
BshFI GGCC 1 cut(s) 288
BshNI GGYRCC 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 288
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 3 cut(s) 9, 173, 290
Bsp143I GATC 2 cut(s) 103, 138
Bsp19I CCATGG 3 cut(s) 10, 117, 144
BspACI CCGC 4 cut(s) 48, 56, 135, 197
BspANI GGCC 1 cut(s) 288
BspFNI CGCG 2 cut(s) 137, 222
BspLI GGNNCC 4 cut(s) 105, 201, 287, 288
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 3 cut(s) 98, 111, 133
BspT107I GGYRCC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 10, 117, 144
BssMI GATC 2 cut(s) 103, 138
BssT1I CCWWGG 3 cut(s) 10, 117, 144
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 3 cut(s) 10, 117, 144
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 2 cut(s) 137, 222
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 2 cut(s) 93, 124
BstKTI GATC 2 cut(s) 106, 141
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 103, 138
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 3 cut(s) 9, 173, 290
BstUI CGCG 2 cut(s) 137, 222
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 103
BstXI CCANNNNNNTGG 2 cut(s) 124, 246
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 288
BtgI CCRYGG 3 cut(s) 10, 117, 144
BtsCI GGATG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 51
CfoI GCGC 2 cut(s) 93, 124
Cfr13I GGNCC 2 cut(s) 286, 287
Csp6I GTAC 1 cut(s) 200
CviAII CATG 3 cut(s) 11, 118, 145
CviJI RGCY 7 cut(s) 15, 51, 178, 190, 242, 260, 288
CviKI_1 RGCY 7 cut(s) 15, 51, 178, 190, 242, 260, 288
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 105, 140
DpnII GATC 2 cut(s) 103, 138
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco130I CCWWGG 3 cut(s) 10, 117, 144
Eco24I GRGCYC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 286
EcoT14I CCWWGG 3 cut(s) 10, 117, 144
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 3 cut(s) 10, 117, 144
FaeI CATG 3 cut(s) 14, 121, 148
FaiI YATR 5 cut(s) 12, 119, 146, 268, 270
FatI CATG 3 cut(s) 10, 117, 144
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 46, 49
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 46, 49
GlaI GCGC 2 cut(s) 92, 123
GluI GCNGC 2 cut(s) 46, 49
GsaI CCCAGC 4 cut(s) 55, 91, 128, 242
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 1 cut(s) 288
HhaI GCGC 2 cut(s) 93, 124
Hin1II CATG 3 cut(s) 14, 121, 148
Hin6I GCGC 2 cut(s) 91, 122
HinP1I GCGC 2 cut(s) 91, 122
HinfI GANTC 2 cut(s) 39, 67
Hpy166II GTNNAC 2 cut(s) 7, 255
Hpy188I TCNGA 2 cut(s) 38, 66
Hpy8I GTNNAC 2 cut(s) 7, 255
Hpy99I CGWCG 3 cut(s) 101, 216, 227
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 7, 20, 45
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 3 cut(s) 14, 121, 148
HspAI GCGC 2 cut(s) 91, 122
KpnI GGTACC 1 cut(s) 203
Kzo9I GATC 2 cut(s) 103, 138
LpnPI CCDG 9 cut(s) 6, 37, 101, 110, 147, 176, 217, 252, 260
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 102
MaeII ACGT 1 cut(s) 211
MalI GATC 2 cut(s) 105, 140
MboI GATC 2 cut(s) 103, 138
MboII GAAGA 2 cut(s) 68, 75
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 3 cut(s) 9, 173, 290
MlyI GAGTC 1 cut(s) 48
MseI TTAA 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 48
MvnI CGCG 2 cut(s) 137, 222
NcoI CCATGG 3 cut(s) 10, 117, 144
NdeI CATATG 1 cut(s) 268
NdeII GATC 2 cut(s) 103, 138
NlaIII CATG 3 cut(s) 14, 121, 148
NlaIV GGNNCC 4 cut(s) 105, 201, 287, 288
PaqCI CACCTGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 47, 50
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspFI CCCAGC 4 cut(s) 51, 87, 124, 238
PspN4I GGNNCC 4 cut(s) 105, 201, 287, 288
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 286, 287
PstI CTGCAG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 2 cut(s) 46, 49
Sau3AI GATC 2 cut(s) 103, 138
Sau96I GGNCC 2 cut(s) 286, 287
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 3 cut(s) 9, 173, 290
SetI ASST 4 cut(s) 214, 244, 262, 279
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 43
SsiI CCGC 4 cut(s) 48, 56, 135, 197
StyI CCWWGG 3 cut(s) 10, 117, 144
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 96
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseI GCWGC 1 cut(s) 45
VneI GTGCAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.