Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007399

Physical Location & Seq

Genomic Coordinates Forward (+)

70196292 .. 70199159

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020930

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGTATAAAATAAAAACCAAGTCCCACCCGCTTCTGCCTTCCGATTTCCGTTGTCCGCTGTCTCTCTGCTCCCCTCAATCTCCTCTGCGGATTCCTCTGCATCTGCAGGAGTTGGCAGAACTGGTGGATGGGCTATCCCCTGAAGAACCCAGGTCAAATTCTGATCACATACACGAGTCCCCAACTGAGAGTGCTAGTTCTCGAGAAACTTGGCCTACTGCAGAGGCCATAATGGCCAAGAAGATGGAGAATGGGAAAGTGGAAAATGATTTTCCTGAACAGTCGGTCATTCGCCGTCTTTCCAGTGCCGATAAGATATCTCTTCGGGACATAGCAAGAGACAGAGTTGATATAGTCTGTGAAAAGATGAATCACCTACCTGATGAGTTTCTGGAAGAATTGAAGAACAACCTCAGAGCCATCCTTGATGGGAATGGTGGTTCACAGCAAAGGGAGGAATTTTTTATCTTGCAAAAGCTTGTTCAGAGTAGAACTGATTTAACTGCCAAGACATTGATTAGAGCACATCGAGTACAGCTTGAAATTCTTGTTGCTATAAATACTGGGATTCTGGCATTCTTGCATCCGAATATCAGTCTCTCGCAAACTTCCCTTATTGAAGTTTTCGTGTACAAGAGATGCAGAAATATAGCATGCCAAAACCAGATTCCAGCTGATGATTGCACCTGTGAGATATGCACCAAAAGAAATGGTTTCTGCAACCTTTGTATGTGTGTAATCTGTAATAAGTTCGATTTTGAAGTGAACACTTGCCGTTGGGTTGGTTGTGATTTGTGTTCTCATTGGACTCACACTGACTGTGCCATTCGCGATGGACTGATCTGCATGGGTGCTTCTGGTAAGAGTGCAGCAGGGCCAACTGAAATGCTTTTTAGGTGCCGAGCTTGTAATAGAACATCTGAGCTACTGGGTTGGGTCAAAGATGTGTTTCAACACTGTGCACCTGCTTGGGAACGGGAGGCGTTGATGAGGGAGCTTGATTTTGTTAGTAGAATTTTTCGTGGTAGTGAAGATCCCCGAGGGCAAAAACTCTACTGGAAATGTGAGGACCTCAAAGAAAAAATAAAAAATGGAGTTGCAGATTCAACAGCAGCCTGCAGAGCAATATTGATGTTTTTCCAAGAGCTTGAGGTAGACTCTCCAAAGAGCTTGGAAAATGGGGAAGGTGGACGGCTGATAGCGCCACAGGAGGCTTGTAATCGAATTGCTGAAGTGGTGCAGGAGGCCATAAGGAAGATGGAAATGGTGGCTGATGAGAAAATGAGAATGTACAAGAAAGCCCGAATGGCTGTAGAGGCTTGTGACAGGGAACTCCAGGACAAGGCCAGGGAAGTTCAAGAACTAAAGCTTGAGAGGCAAAAAAAGAAGCAACAAGTTGAAGAGCTGGAGAGAATTGTGAGGCTCAAAAACGCAGAGGCTGATATGTTCCAACTCAAGGCCAATGAGGCTAAACGAGAGGCTGACAGGCTCCAGAGGATTGCTCTTGCCAAGTCAGATAAATCAGAGGAAGAATATGCTAGTAGTTACTTGAAACAACGATTGAGTGAAGCTGAGGCTGAGAAGCAGTATCTGTTTGAGAAGATCAAACTCCAAGAAAGTTCCCGGGCGTCCCAGAACAGTGGTGGTAGTGTTGACCCATCGCAGATGCTGATGTATTCGAAGATGCATGATCTGCTTTACAGCGGTGCTCCCAAGACGGACTGCCTGCCTAATGAACGCCATCCTTTCAGAAAAAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

588

Amino Acids

67.05

Weight (kDa)

6.67

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	214 - 337	2.7e-41	PHD - plant homeodomain finger protein
Oberon_cc	PF16312	432 - 566	1.5e-51	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48160 AT5G48160
fragaria_vesca	FvH4_6g41110 FvH4_6g41110
malus_domestica	MD09G1122100.v1.1 MD17G1113100.v1.1
prunus_persica	Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1
pyrus_communis	pycom09g04640 pycom17g10470
rosa_chinensis	RchiOBHm_Chr2g0156671
rosa_laevigata	RLG00000020930
rosa_multiflora	Rmu_sc0001130.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092850
rosa_rugosa	Rorug02G0455400
rosa_samantha	Rh2AG520900 Rh2BG534100 Rh2CG505900 Rh2DG542900
rosa_wichuraiana	Rw0G013730 Rw2G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	973
Acc36I	ACCTGC	1 cut(s)	973
AccB1I	GGYRCC	1 cut(s)	897
AccI	GTMKAC	1 cut(s)	1155
AccII	CGCG	1 cut(s)	831
AciI	CCGC	4 cut(s)	29, 56, 88, 1704
AclWI	GGATC	1 cut(s)	1028
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	4 cut(s)	157, 458, 543, 1014
AcuI	CTGAAG	2 cut(s)	162, 1251
AcyI	GRCGYC	1 cut(s)	1628
AfaI	GTAC	3 cut(s)	534, 632, 1292
AfiI	CCNNNNNNNGG	2 cut(s)	1342, 1456
AgsI	TTSAA	9 cut(s)	403, 542, 620, 761, 953, 1107, 1358, 1400, 1552
AjnI	CCWGG	3 cut(s)	149, 1335, 1346
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
AloI	GAACNNNNNNTCC	2 cut(s)	424, 456
Alw21I	GWGCWC	3 cut(s)	526, 964, 1711
Alw26I	GTCTC	3 cut(s)	66, 333, 602
Alw44I	GTGCAC	1 cut(s)	960
AlwI	GGATC	1 cut(s)	1028
AlwNI	CAGNNNCTG	3 cut(s)	1439, 1591, 1669
Ama87I	CYCGRG	3 cut(s)	201, 1038, 1623
AoxI	GGCC	7 cut(s)	212, 225, 234, 875, 1245, 1344, 1458
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	2 cut(s)	869, 1112
ApoI	RAATTY	4 cut(s)	157, 458, 543, 1014
AspLEI	GCGC	1 cut(s)	1204
AspS9I	GGNCC	2 cut(s)	875, 1069
AsuC2I	CCSGG	2 cut(s)	1624, 1625
AsuHPI	GGTGA	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	1679
AvaI	CYCGRG	3 cut(s)	201, 1038, 1623
AvaII	GGWCC	1 cut(s)	1069
BaeGI	GKGCMC	1 cut(s)	964
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	897
BauI	CACGAG	1 cut(s)	173
Bbv12I	GWGCWC	3 cut(s)	526, 964, 1711
BbvCI	CCTCAGC	1 cut(s)	1572
BbvI	GCAGC	2 cut(s)	881, 1124
BccI	CCATC	8 cut(s)	122, 238, 422, 428, 827, 1252, 1666, 1749
BceAI	ACGGC	3 cut(s)	279, 759, 1208
BciT130I	CCWGG	3 cut(s)	151, 1337, 1348
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	2 cut(s)	1624, 1625
BcoDI	GTCTC	3 cut(s)	66, 333, 602
BfaI	CTAG	2 cut(s)	195, 1539
BfmI	CTRYAG	4 cut(s)	104, 219, 1117, 1311
BfoI	RGCGCY	1 cut(s)	1205
BfuAI	ACCTGC	1 cut(s)	973
BglI	GCCNNNNNGGC	3 cut(s)	233, 1307, 1466
BisI	GCNGC	2 cut(s)	870, 1113
BlsI	GCNGC	2 cut(s)	871, 1114
Bme1390I	CCNGG	5 cut(s)	151, 1337, 1348, 1624, 1625
Bme18I	GGWCC	1 cut(s)	1069
BmeT110I	CYCGRG	3 cut(s)	201, 1038, 1623
BmgT120I	GGNCC	2 cut(s)	875, 1069
BmiI	GGNNCC	2 cut(s)	899, 1490
BmrFI	CCNGG	5 cut(s)	151, 1337, 1348, 1624, 1625
BmrI	ACTGGG	2 cut(s)	573, 938
BmsI	GCATC	5 cut(s)	109, 592, 629, 1656, 1674
BmuI	ACTGGG	2 cut(s)	573, 938
BplI	GAGNNNNNCTC	4 cut(s)	1142, 1174, 1486, 1518
BpmI	CTGGAG	3 cut(s)	1319, 1427, 1475
Bpu10I	CCTNAGC	1 cut(s)	1572
Bpu14I	TTCGAA	1 cut(s)	1679
BpuEI	CTTGAG	3 cut(s)	1169, 1391, 1439
BpuMI	CCSGG	2 cut(s)	1624, 1625
BsaHI	GRCGYC	1 cut(s)	1628
BsaJI	CCNNGG	4 cut(s)	149, 1039, 1347, 1623
Bsc4I	CCNNNNNNNGG	2 cut(s)	1342, 1456
Bse1I	ACTGG	5 cut(s)	126, 303, 568, 933, 1061
BseBI	CCWGG	3 cut(s)	151, 1337, 1348
BseDI	CCNNGG	4 cut(s)	149, 1039, 1347, 1623
BseGI	GGATG	4 cut(s)	133, 420, 583, 1741
BseLI	CCNNNNNNNGG	2 cut(s)	1342, 1456
BseMII	CTCAG	5 cut(s)	177, 427, 912, 1563, 1569
BseNI	ACTGG	5 cut(s)	126, 303, 568, 933, 1061
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	2 cut(s)	881, 1124
BsgI	GTGCAG	2 cut(s)	888, 1259
Bsh1236I	CGCG	1 cut(s)	831
BshFI	GGCC	7 cut(s)	214, 227, 236, 877, 1247, 1346, 1460
BshNI	GGYRCC	1 cut(s)	897
BsiHKAI	GWGCWC	3 cut(s)	526, 964, 1711
BsiHKCI	CYCGRG	3 cut(s)	201, 1038, 1623
BsiSI	CCGG	1 cut(s)	1624
BslFI	GGGAC	4 cut(s)	7, 163, 341, 1615
BslI	CCNNNNNNNGG	2 cut(s)	1342, 1456
BsmAI	GTCTC	3 cut(s)	66, 333, 602
BsmFI	GGGAC	4 cut(s)	7, 163, 341, 1615
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	7 cut(s)	214, 227, 236, 877, 1247, 1346, 1460
BsoBI	CYCGRG	3 cut(s)	201, 1038, 1623
Bsp119I	TTCGAA	1 cut(s)	1679
Bsp1286I	GDGCHC	3 cut(s)	526, 964, 1711
Bsp1407I	TGTACA	2 cut(s)	630, 1290
Bsp143I	GATC	5 cut(s)	163, 840, 1033, 1602, 1690
Bsp68I	TCGCGA	1 cut(s)	831
BspACI	CCGC	4 cut(s)	29, 56, 88, 1704
BspANI	GGCC	7 cut(s)	214, 227, 236, 877, 1247, 1346, 1460
BspCNI	CTCAG	5 cut(s)	178, 426, 913, 1564, 1570
BspFNI	CGCG	1 cut(s)	831
BspLI	GGNNCC	2 cut(s)	899, 1490
BspMAI	CTGCAG	3 cut(s)	108, 223, 1121
BspMI	ACCTGC	1 cut(s)	973
BspPI	GGATC	1 cut(s)	1028
BspQI	GCTCTTC	1 cut(s)	1395
BspT104I	TTCGAA	1 cut(s)	1679
BspT107I	GGYRCC	1 cut(s)	897
BsrGI	TGTACA	2 cut(s)	630, 1290
BsrI	ACTGG	5 cut(s)	126, 303, 568, 933, 1061
BssECI	CCNNGG	4 cut(s)	149, 1039, 1347, 1623
BssMI	GATC	5 cut(s)	163, 840, 1033, 1602, 1690
BssNI	GRCGYC	1 cut(s)	1628
BssSI	CACGAG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	173
Bst2UI	CCWGG	3 cut(s)	151, 1337, 1348
Bst4CI	ACNGT	4 cut(s)	282, 821, 959, 1640
Bst6I	CTCTTC	2 cut(s)	327, 1395
BstACI	GRCGYC	1 cut(s)	1628
BstAPI	GCANNNNNTGC	1 cut(s)	1693
BstAUI	TGTACA	2 cut(s)	630, 1290
BstBI	TTCGAA	1 cut(s)	1679
BstC8I	GCNNGC	3 cut(s)	655, 1117, 1727
BstDEI	CTNAG	5 cut(s)	186, 413, 921, 1572, 1578
BstF5I	GGATG	4 cut(s)	133, 420, 583, 1741
BstFNI	CGCG	1 cut(s)	831
BstH2I	RGCGCY	1 cut(s)	1205
BstHHI	GCGC	1 cut(s)	1204
BstKTI	GATC	5 cut(s)	166, 843, 1036, 1605, 1693
BstMAI	GTCTC	3 cut(s)	66, 333, 602
BstMBI	GATC	5 cut(s)	163, 840, 1033, 1602, 1690
BstMWI	GCNNNNNNNGC	8 cut(s)	233, 1121, 1201, 1307, 1316, 1375, 1466, 1693
BstNI	CCWGG	3 cut(s)	151, 1337, 1348
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	5 cut(s)	149, 1335, 1346, 1622, 1623
BstSFI	CTRYAG	4 cut(s)	104, 219, 1117, 1311
BstSLI	GKGCMC	1 cut(s)	964
BstUI	CGCG	1 cut(s)	831
BstV1I	GCAGC	2 cut(s)	881, 1124
BstX2I	RGATCY	1 cut(s)	1033
BstXI	CCANNNNNNTGG	2 cut(s)	244, 1640
BstYI	RGATCY	1 cut(s)	1033
BsuRI	GGCC	7 cut(s)	214, 227, 236, 877, 1247, 1346, 1460
BtgZI	GCGATG	2 cut(s)	846, 1644
BtsCI	GGATG	4 cut(s)	133, 420, 583, 1741
BtsIMutI	CAGTG	4 cut(s)	310, 813, 955, 1645
BtuMI	TCGCGA	1 cut(s)	831
BveI	ACCTGC	1 cut(s)	973
Cac8I	GCNNGC	3 cut(s)	655, 1117, 1727
CaiI	CAGNNNCTG	3 cut(s)	1439, 1591, 1669
CfoI	GCGC	1 cut(s)	1204
Cfr13I	GGNCC	2 cut(s)	875, 1069
Cfr9I	CCCGGG	1 cut(s)	1623
CseI	GACGC	1 cut(s)	1617
Csp6I	GTAC	3 cut(s)	533, 631, 1291
CviAII	CATG	3 cut(s)	654, 847, 1688
CviQI	GTAC	3 cut(s)	533, 631, 1291
DdeI	CTNAG	5 cut(s)	186, 413, 921, 1572, 1578
DpnI	GATC	5 cut(s)	165, 842, 1035, 1604, 1692
DpnII	GATC	5 cut(s)	163, 840, 1033, 1602, 1690
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	327, 1395
EarI	CTCTTC	2 cut(s)	327, 1395
Eco32I	GATATC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	1069
Eco57I	CTGAAG	2 cut(s)	162, 1251
Eco88I	CYCGRG	3 cut(s)	201, 1038, 1623
EcoO109I	RGGNCCY	1 cut(s)	1069
EcoRII	CCWGG	3 cut(s)	149, 1335, 1346
EcoRV	GATATC	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	1689
FaeI	CATG	3 cut(s)	657, 850, 1691
FaqI	GGGAC	4 cut(s)	7, 163, 341, 1615
FatI	CATG	3 cut(s)	653, 846, 1687
FauI	CCCGC	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	1155
Fnu4HI	GCNGC	2 cut(s)	870, 1113
FokI	GGATG	4 cut(s)	140, 407, 570, 1728
Fsp4HI	GCNGC	2 cut(s)	870, 1113
FspBI	CTAG	2 cut(s)	195, 1539
GlaI	GCGC	1 cut(s)	1203
GluI	GCNGC	2 cut(s)	870, 1113
GsuI	CTGGAG	3 cut(s)	1319, 1427, 1475
HaeII	RGCGCY	1 cut(s)	1205
HaeIII	GGCC	7 cut(s)	214, 227, 236, 877, 1247, 1346, 1460
HapII	CCGG	1 cut(s)	1624
HgaI	GACGC	1 cut(s)	1617
HhaI	GCGC	1 cut(s)	1204
Hin1I	GRCGYC	1 cut(s)	1628
Hin1II	CATG	3 cut(s)	657, 850, 1691
Hin6I	GCGC	1 cut(s)	1202
HinP1I	GCGC	1 cut(s)	1202
HincII	GTYRAC	1 cut(s)	1654
HindII	GTYRAC	1 cut(s)	1654
HindIII	AAGCTT	2 cut(s)	476, 1367
HinfI	GANTC	8 cut(s)	91, 176, 370, 568, 667, 808, 1103, 1157
HpaII	CCGG	1 cut(s)	1624
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	7 cut(s)	443, 631, 766, 962, 1156, 1190, 1654
Hpy188I	TCNGA	9 cut(s)	43, 163, 416, 486, 588, 922, 1516, 1525, 1751
Hpy188III	TCNNGA	8 cut(s)	201, 203, 275, 326, 392, 830, 1358, 1492
Hpy8I	GTNNAC	7 cut(s)	443, 631, 766, 962, 1156, 1190, 1654
HpyAV	CCTTC	2 cut(s)	48, 1178
HpyCH4III	ACNGT	4 cut(s)	282, 821, 959, 1640
HpyF10VI	GCNNNNNNNGC	8 cut(s)	233, 1121, 1201, 1307, 1316, 1375, 1466, 1693
HpyF3I	CTNAG	5 cut(s)	186, 413, 921, 1572, 1578
Hsp92I	GRCGYC	1 cut(s)	1628
Hsp92II	CATG	3 cut(s)	657, 850, 1691
HspAI	GCGC	1 cut(s)	1202
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	163, 840, 1033, 1602, 1690
LguI	GCTCTTC	1 cut(s)	1395
LmnI	GCTCC	4 cut(s)	74, 994, 1494, 1714
Lsp1109I	GCAGC	2 cut(s)	881, 1124
LweI	GCATC	5 cut(s)	109, 592, 629, 1656, 1674
MaeI	CTAG	2 cut(s)	195, 1539
MaeIII	GTNAC	2 cut(s)	1322, 1544
MalI	GATC	5 cut(s)	165, 842, 1035, 1604, 1692
MboI	GATC	5 cut(s)	163, 840, 1033, 1602, 1690
MflI	RGATCY	1 cut(s)	1033
MhlI	GDGCHC	3 cut(s)	526, 964, 1711
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	7 cut(s)	157, 398, 458, 543, 1014, 1224, 1413
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	3 cut(s)	185, 802, 1151
MmeI	TCCRAC	1 cut(s)	1474
Mox20I	TGGCCA	1 cut(s)	236
Mph1103I	ATGCAT	1 cut(s)	1689
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	3 cut(s)	58, 674, 1704
MspI	CCGG	1 cut(s)	1624
MspR9I	CCNGG	5 cut(s)	151, 1337, 1348, 1624, 1625
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	3 cut(s)	151, 1337, 1348
MvnI	CGCG	1 cut(s)	831
MwoI	GCNNNNNNNGC	8 cut(s)	233, 1121, 1201, 1307, 1316, 1375, 1466, 1693
NciI	CCSGG	2 cut(s)	1624, 1625
NdeII	GATC	5 cut(s)	163, 840, 1033, 1602, 1690
NlaIII	CATG	3 cut(s)	657, 850, 1691
NlaIV	GGNNCC	2 cut(s)	899, 1490
NmeAIII	GCCGAG	1 cut(s)	926
NmuCI	GTSAC	1 cut(s)	1322
NruI	TCGCGA	1 cut(s)	831
NsiI	ATGCAT	1 cut(s)	1689
NspI	RCATGY	1 cut(s)	657
NspV	TTCGAA	1 cut(s)	1679
PaeI	GCATGC	1 cut(s)	657
PaeR7I	CTCGAG	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	973
PciSI	GCTCTTC	1 cut(s)	1395
PctI	GAATGC	1 cut(s)	575
PfeI	GAWTC	5 cut(s)	91, 370, 568, 667, 1103
PfoI	TCCNGGA	1 cut(s)	1335
PkrI	GCNGC	2 cut(s)	871, 1114
PleI	GAGTC	3 cut(s)	184, 802, 1151
PpsI	GAGTC	3 cut(s)	184, 802, 1151
PpuMI	RGGWCCY	1 cut(s)	1069
Psp5II	RGGWCCY	1 cut(s)	1069
Psp6I	CCWGG	3 cut(s)	149, 1335, 1346
PspGI	CCWGG	3 cut(s)	149, 1335, 1346
PspN4I	GGNNCC	2 cut(s)	899, 1490
PspPI	GGNCC	2 cut(s)	875, 1069
PspPPI	RGGWCCY	1 cut(s)	1069
PstI	CTGCAG	3 cut(s)	108, 223, 1121
PstNI	CAGNNNCTG	3 cut(s)	1439, 1591, 1669
PsuI	RGATCY	1 cut(s)	1033
PvuII	CAGCTG	1 cut(s)	674
RruI	TCGCGA	1 cut(s)	831
RsaI	GTAC	3 cut(s)	534, 632, 1292
RsaNI	GTAC	3 cut(s)	533, 631, 1291
SapI	GCTCTTC	1 cut(s)	1395
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	2 cut(s)	870, 1113
Sau3AI	GATC	5 cut(s)	163, 840, 1033, 1602, 1690
Sau96I	GGNCC	2 cut(s)	875, 1069
SchI	GAGTC	3 cut(s)	185, 802, 1151
ScrFI	CCNGG	5 cut(s)	151, 1337, 1348, 1624, 1625
SduI	GDGCHC	3 cut(s)	526, 964, 1711
SfaNI	GCATC	5 cut(s)	109, 592, 629, 1656, 1674
SfcI	CTRYAG	4 cut(s)	104, 219, 1117, 1311
SfiI	GGCCNNNNNGGCC	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	1679
SinI	GGWCC	1 cut(s)	1069
SlaI	CTCGAG	1 cut(s)	201
SmaI	CCCGGG	1 cut(s)	1625
SmlI	CTYRAG	4 cut(s)	201, 1148, 1370, 1454
SmoI	CTYRAG	4 cut(s)	201, 1148, 1370, 1454
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	7 cut(s)	157, 398, 458, 543, 1014, 1224, 1413
SsiI	CCGC	4 cut(s)	29, 56, 88, 1704
SspI	AATATT	1 cut(s)	1128
SspMI	CTAG	2 cut(s)	195, 1539
StyD4I	CCNGG	5 cut(s)	149, 1335, 1346, 1622, 1623
TaaI	ACNGT	4 cut(s)	282, 821, 959, 1640
TaqI	TCGA	5 cut(s)	202, 529, 753, 1222, 1679
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	7 cut(s)	157, 398, 458, 543, 1014, 1224, 1413
TatI	WGTACW	3 cut(s)	532, 630, 1290
TfiI	GAWTC	5 cut(s)	91, 370, 568, 667, 1103
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	4 cut(s)	310, 820, 962, 1645
TseFI	GTSAC	1 cut(s)	1322
TseI	GCWGC	2 cut(s)	869, 1112
Tsp45I	GTSAC	1 cut(s)	1322
TspDTI	ATGAA	2 cut(s)	383, 1749
TspGWI	ACGGA	2 cut(s)	38, 1733
TspMI	CCCGGG	1 cut(s)	1623
TspRI	CASTG	4 cut(s)	310, 820, 962, 1645
VneI	GTGCAC	1 cut(s)	960
VpaK11BI	GGWCC	1 cut(s)	1069
XapI	RAATTY	4 cut(s)	157, 458, 543, 1014
XceI	RCATGY	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1255, 1640
XhoI	CTCGAG	1 cut(s)	201
XmaI	CCCGGG	1 cut(s)	1623
XmiI	GTMKAC	1 cut(s)	1155
XspI	CTAG	2 cut(s)	195, 1539
Zsp2I	ATGCAT	1 cut(s)	1689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.