Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007399

Physical Location & Seq

Genomic Coordinates Forward (+)

58498199 .. 58498709

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0455400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGAACGTGTTTGGCATCCCCATAATCGACTCAACCCTAGCAGCAATGCCAGAGTATGCCAACAAGCAAATAACCGCAGTTGATAGGGCACGCGTGTCTCTCAACTTGCAAAGCGCCGACATGAAGGCTGCCAACGCACTCACTTACGTGGAGAATTTGAAGAAGCAGTACGGAGATGAGTATGGGCACATTGGACCAGCCCCATCTCCATTGCGAATTCAAAATGGCCAGTGGGGTGCATTTCTGCACGTGAAAACCGCTGAAGCTCCAACCGGATCTTATGCCGGTGTTGTGTATCGCGGCAAGAACCCCAATGGCGCCGTTGACTGGGACTGCATGATGGCATGGCGTAACCCTTTTGTGAACACCAACAACTCAGTAGATACATTAACCTATATCCCTAACTCACCCAAGTTTAGAAACCTGTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

145

Amino Acids

15.91

Weight (kDa)

8.71

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	62 - 124	3.5e-14	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48160 AT5G48160
fragaria_vesca	FvH4_6g41110 FvH4_6g41110
malus_domestica	MD09G1122100.v1.1 MD17G1113100.v1.1
prunus_persica	Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1 Prupe.3G201500_v2.0.a1
pyrus_communis	pycom09g04640 pycom17g10470
rosa_chinensis	RchiOBHm_Chr2g0156671
rosa_laevigata	RLG00000020930
rosa_multiflora	Rmu_sc0001130.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092850
rosa_rugosa	Rorug02G0455400
rosa_samantha	Rh2AG520900 Rh2BG534100 Rh2CG505900 Rh2DG542900
rosa_wichuraiana	Rw0G013730 Rw2G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AccII	CGCG	2 cut(s)	96, 303
AciI	CCGC	3 cut(s)	78, 261, 303
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	157, 219
AcuI	CTGAAG	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	330
AflIII	ACRYGT	2 cut(s)	9, 94
AgsI	TTSAA	2 cut(s)	163, 224
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	44, 131
ApoI	RAATTY	2 cut(s)	157, 219
AspLEI	GCGC	2 cut(s)	119, 323
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	2 cut(s)	94, 192
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BbrPI	CACGTG	1 cut(s)	253
BbvI	GCAGC	2 cut(s)	56, 118
BccI	CCATC	2 cut(s)	214, 337
BceAI	ACGGC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	2 cut(s)	120, 324
BisI	GCNGC	3 cut(s)	45, 132, 304
BlsI	GCNGC	3 cut(s)	46, 133, 305
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	322
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	340
BsaAI	YACGTR	2 cut(s)	151, 253
BsaHI	GRCGYC	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	232, 335
Bse3DI	GCAATG	2 cut(s)	54, 212
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	2 cut(s)	54, 212
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	232, 335
BseSI	GKGCMC	2 cut(s)	94, 192
BseXI	GCAGC	2 cut(s)	56, 118
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	2 cut(s)	96, 303
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	276, 288
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	94, 192
Bsp143I	GATC	1 cut(s)	278
BspACI	CCGC	3 cut(s)	78, 261, 303
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	392
BspFNI	CGCG	2 cut(s)	96, 303
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	54, 212
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	232, 335
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	1 cut(s)	278
BssNI	GRCGYC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	321
BstBAI	YACGTR	2 cut(s)	151, 253
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	2 cut(s)	96, 303
BstH2I	RGCGCY	2 cut(s)	120, 324
BstHHI	GCGC	2 cut(s)	119, 323
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstSLI	GKGCMC	2 cut(s)	94, 192
BstUI	CGCG	2 cut(s)	96, 303
BstV1I	GCAGC	2 cut(s)	56, 118
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	2 cut(s)	119, 323
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	3 cut(s)	124, 340, 348
CviJI	RGCY	4 cut(s)	131, 203, 231, 269
CviKI_1	RGCY	4 cut(s)	131, 203, 231, 269
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	379
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	219
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
FaeI	CATG	3 cut(s)	127, 343, 351
FaiI	YATR	8 cut(s)	26, 60, 125, 186, 285, 341, 349, 399
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	123, 339, 347
Fnu4HI	GCNGC	3 cut(s)	45, 132, 304
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	3 cut(s)	45, 132, 304
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	2 cut(s)	118, 322
GluI	GCNGC	3 cut(s)	45, 132, 304
HaeII	RGCGCY	2 cut(s)	120, 324
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	276, 288
HhaI	GCGC	2 cut(s)	119, 323
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	3 cut(s)	127, 343, 351
Hin6I	GCGC	2 cut(s)	117, 321
HinP1I	GCGC	2 cut(s)	117, 321
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	276, 288
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	2 cut(s)	328, 367
Hpy8I	GTNNAC	2 cut(s)	328, 367
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	3 cut(s)	9, 150, 252
HpyCH4V	TGCA	4 cut(s)	112, 242, 250, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	3 cut(s)	9, 150, 252
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	127, 343, 351
HspAI	GCGC	2 cut(s)	117, 321
KasI	GGCGCC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	66, 213, 245, 289, 301, 316
Lsp1109I	GCAGC	2 cut(s)	56, 118
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	3 cut(s)	9, 150, 252
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	2 cut(s)	94, 192
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	2 cut(s)	157, 219
MluI	ACGCGT	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	231
Mly113I	GGCGCC	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	296
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	2 cut(s)	276, 288
MvnI	CGCG	2 cut(s)	96, 303
MwoI	GCNNNNNNNGC	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	321
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	127, 343, 351
NlaIV	GGNNCC	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	46, 133, 305
PleI	GAGTC	1 cut(s)	26
PluTI	GGCGCC	1 cut(s)	324
PmaCI	CACGTG	1 cut(s)	253
PmlI	CACGTG	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	2 cut(s)	151, 253
PspCI	CACGTG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	3 cut(s)	45, 132, 304
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	94, 192
SetI	ASST	6 cut(s)	12, 153, 255, 271, 398, 429
SfaNI	GCATC	1 cut(s)	27
SfoI	GGCGCC	1 cut(s)	322
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	157, 219
SsiI	CCGC	3 cut(s)	78, 261, 303
SspDI	GGCGCC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	41
TaiI	ACGT	3 cut(s)	12, 153, 255
TaqI	TCGA	1 cut(s)	30
TasI	AATT	2 cut(s)	157, 219
TauI	GCSGC	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	239
TseI	GCWGC	2 cut(s)	44, 131
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	157, 219
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.