RLG00000021476

Beta-catenin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009600
Physical Location & Seq
Reverse (-)
75727397 .. 75727993
597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021476

Sequence Viewer

Length: 597 bp
ATGACCAAGTACCCGCCGGCTTGTGAACGTTTTGTTGATGTTTTGGGGTTGAAGACGGCCTTTGCAGCTTTTATGGGTAAGGTTCCCATTAATAAGAATGAAAAGAAAGAAAGGTATCATGAGGAGTTGGAGGAGCGCATTGTGTCACTAATTGCATCGTTATTTGGTGGAATTCTGAGGGGTTCTAGAAGGGAGAGACTGTTGAGCAAGTTTGTGGAAAATGAATGTGAAAAGATAGACCGGCTTATGGAACTTTATATGAGATATTCGAATAGAGTTAAAGCTGAAACTGACCGAATTGACCAGCTTGATCTTGATGATTTAGAGATGGATGAAGAGGAAATATACATTCGGAAGCTTGAAGCTGGACTTTATACCCTTCAGTTGATTGCTGTTATTTTGGGTCATCTTTGGTGCTCTGAGCATCCTCAAATGAGAGGAAGAATTGAACTACTTCTCAAGCAGCAAAAGCTTACTAAGAAGGATGTTAAGGATATACTTCAGGAGTATCATGACAACATCGGTGATACGGAAGGAGCGGAAGAAAAAGAGCGATCACAGGCAAAGATTCAAAAGTTCATCTCAGCTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
CTNNBL

Protein Analysis

199

Amino Acids

23.24

Weight (kDa)

5.58

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTNNBL PF08216 6 - 168 3.3e-46 Catenin-beta-like, Arm-motif containing nuclear
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 539
AciI CCGC 2 cut(s) 14, 539
AclI AACGTT 1 cut(s) 28
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 2 cut(s) 365, 485
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 4 cut(s) 52, 362, 449, 572
AluBI AGCT 7 cut(s) 68, 284, 307, 358, 365, 472, 587
AluI AGCT 7 cut(s) 68, 284, 307, 358, 365, 472, 587
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 65, 463
ApoI RAATTY 1 cut(s) 171
AseI ATTAAT 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 536
AsuII TTCGAA 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 77, 475
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 186
BisI GCNGC 2 cut(s) 66, 464
BlsI GCNGC 2 cut(s) 67, 465
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 2 cut(s) 164, 433
BpiI GAAGAC 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 443
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 2 cut(s) 16, 240
BseGI GGATG 3 cut(s) 337, 424, 490
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 167, 411, 597
BseRI GAGGAG 2 cut(s) 137, 146
BseXI GCAGC 2 cut(s) 77, 475
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 2 cut(s) 17, 241
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 2 cut(s) 310, 554
BspACI CCGC 2 cut(s) 14, 539
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 3 cut(s) 168, 412, 596
BspHI TCATGA 2 cut(s) 118, 511
BspLI GGNNCC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 539
BsrFI RCCGGY 2 cut(s) 16, 240
BssAI RCCGGY 2 cut(s) 16, 240
BssMI GATC 2 cut(s) 310, 554
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 330
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 4 cut(s) 176, 420, 477, 583
BstF5I GGATG 3 cut(s) 337, 424, 490
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 2 cut(s) 313, 557
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 310, 554
BstMWI GCNNNNNNNGC 2 cut(s) 65, 469
BstV1I GCAGC 2 cut(s) 77, 475
BstV2I GAAGAC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 3 cut(s) 337, 424, 490
Cac8I GCNNGC 1 cut(s) 18
CciI TCATGA 2 cut(s) 118, 511
CfoI GCGC 1 cut(s) 138
Cfr10I RCCGGY 2 cut(s) 16, 240
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 119, 512
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 4 cut(s) 176, 420, 477, 583
DpnI GATC 2 cut(s) 312, 556
DpnII GATC 2 cut(s) 310, 554
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 365, 485
EcoRI GAATTC 1 cut(s) 171
FaeI CATG 2 cut(s) 122, 515
FaiI YATR 9 cut(s) 74, 120, 248, 258, 260, 346, 375, 497, 513
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 354, 386
FatI CATG 2 cut(s) 118, 511
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 66, 464
FokI GGATG 3 cut(s) 344, 411, 497
Fsp4HI GCNGC 2 cut(s) 66, 464
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 137
GluI GCNGC 2 cut(s) 66, 464
HaeIII GGCC 1 cut(s) 59
HapII CCGG 2 cut(s) 17, 241
HhaI GCGC 1 cut(s) 138
Hin1II CATG 2 cut(s) 122, 515
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HindIII AAGCTT 2 cut(s) 356, 470
HinfI GANTC 1 cut(s) 568
HpaII CCGG 2 cut(s) 17, 241
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 177, 354, 421
Hpy188III TCNNGA 5 cut(s) 119, 186, 314, 503, 512
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 183, 389, 475, 527
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 65, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 469
HpyF3I CTNAG 4 cut(s) 176, 420, 477, 583
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 2 cut(s) 122, 515
HspAI GCGC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 310, 554
LmnI GCTCC 2 cut(s) 133, 536
LpnPI CCDG 6 cut(s) 30, 254, 317, 351, 488, 545
Lsp1109I GCAGC 2 cut(s) 77, 475
LweI GCATC 2 cut(s) 164, 433
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 144
MalI GATC 2 cut(s) 312, 556
MbiI CCGCTC 1 cut(s) 539
MboI GATC 2 cut(s) 310, 554
MboII GAAGA 4 cut(s) 64, 347, 453, 554
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 4 cut(s) 150, 171, 297, 444
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 6 cut(s) 115, 124, 171, 331, 431, 438
MroNI GCCGGC 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 3 cut(s) 90, 279, 489
MspI CCGG 2 cut(s) 17, 241
MwoI GCNNNNNNNGC 2 cut(s) 65, 469
NaeI GCCGGC 1 cut(s) 18
NdeII GATC 2 cut(s) 310, 554
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 122, 515
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 144
NspV TTCGAA 1 cut(s) 269
PagI TCATGA 2 cut(s) 118, 511
PdiI GCCGGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 1 cut(s) 568
PkrI GCNGC 2 cut(s) 67, 465
PshBI ATTAAT 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 84
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 90, 279, 489
SatI GCNGC 2 cut(s) 66, 464
Sau3AI GATC 2 cut(s) 310, 554
SduI GDGCHC 1 cut(s) 419
SfaNI GCATC 2 cut(s) 164, 433
SfuI TTCGAA 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 4 cut(s) 150, 171, 297, 444
SsiI CCGC 2 cut(s) 14, 539
SspMI CTAG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 269
TaqII GACCGA 1 cut(s) 309
TasI AATT 4 cut(s) 150, 171, 297, 444
TfiI GAWTC 1 cut(s) 568
Tru1I TTAA 3 cut(s) 90, 279, 489
Tru9I TTAA 3 cut(s) 90, 279, 489
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 2 cut(s) 65, 463
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 4 cut(s) 114, 237, 348, 568
TspGWI ACGGA 1 cut(s) 545
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 1 cut(s) 171
XbaI TCTAGA 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.