Rmu_co8254523.1_g000001

Beta-catenin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8254523.1
OG0009600
Physical Location & Seq
Reverse (-)
2 .. 732
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8254523.1_g000001.1.cds

Sequence Viewer

Length: 731 bp
atggaagactatcgcgatgcgaaacgcaaacgcgacgacgccgtcttggccatcaacggcaacactaaaatcgtcgacctcgccgtgttggaggcgttagcgaaggagagcgcagttgaagcgctggaccctcgaaccctaaagaagctggtgctggccttcgagcgccgcctcaaggacaacatcgccgcccgtctcaagtacccgaaccaaccggagcgcttcgccgactccgaaatcgaactccacgaagagcttcagaagctcaaaggcctcgccagcgctcccgagctctaccccgagctcgtcgccctcaacactgttccctccatcctcaacctcctcagccacgacaacaccgacattgcgatcgacgtcgttcagttgctgcaggacttgaccgacgaggacaccgtcgacgagaacgacgagcccgctcgggtcctggtggatgcgctcgtcgacaacaatgtgctcgagctcttggttcagaatctgctccggttgtccgactccgaccccgacgagatggccgccgtccacggcactctcgcgacggtcgagaatctgattgaggttaagccggcggtggcggagttggtgtgcgaaaagaccaaattgctcaagtggttgatgagtaagatcaaggtgaaggagtttgatggaaacaaacagtacgcgtcggaaatactggctatactgctgcagaatagtgaggccaatcagaagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
CTNNBL

Protein Analysis

243

Amino Acids

27.15

Weight (kDa)

4.63

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 378
AccBSI CCGCTC 1 cut(s) 437
AccI GTMKAC 3 cut(s) 75, 417, 462
AccII CGCG 4 cut(s) 15, 33, 554, 680
AciI CCGC 6 cut(s) 169, 189, 435, 534, 587, 593
AcoI YGGCCR 2 cut(s) 48, 531
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 2 cut(s) 39, 375
AfaI GTAC 2 cut(s) 203, 677
AfeI AGCGCT 3 cut(s) 123, 221, 283
AfiI CCNNNNNNNGG 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 678
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 6 cut(s) 148, 256, 265, 292, 304, 481
AluI AGCT 6 cut(s) 148, 256, 265, 292, 304, 481
Alw21I GWGCWC 4 cut(s) 294, 306, 477, 483
Alw26I GTCTC 1 cut(s) 200
AlwNI CAGNNNCTG 2 cut(s) 388, 496
Ama87I CYCGRG 4 cut(s) 287, 299, 438, 476
Aor51HI AGCGCT 3 cut(s) 123, 221, 283
AoxI GGCC 5 cut(s) 48, 156, 271, 531, 717
ApeKI GCWGC 2 cut(s) 388, 703
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 6 cut(s) 113, 124, 168, 222, 284, 457
AspS9I GGNCC 2 cut(s) 127, 442
AsuHPI GGTGA 1 cut(s) 661
AvaI CYCGRG 4 cut(s) 287, 299, 438, 476
AvaII GGWCC 2 cut(s) 127, 442
BalI TGGCCA 1 cut(s) 50
BanII GRGCYC 4 cut(s) 294, 306, 435, 483
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 4 cut(s) 294, 306, 477, 483
BbvCI CCTCAGC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 375, 690
BccI CCATC 4 cut(s) 59, 338, 523, 656
BceAI ACGGC 5 cut(s) 26, 68, 73, 521, 559
BciT130I CCWGG 1 cut(s) 446
BcoDI GTCTC 1 cut(s) 200
BfmI CTRYAG 2 cut(s) 389, 704
BfoI RGCGCY 4 cut(s) 125, 169, 223, 285
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 5 cut(s) 169, 189, 389, 534, 704
BlsI GCNGC 5 cut(s) 170, 190, 390, 535, 705
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 2 cut(s) 127, 442
BmeT110I CYCGRG 4 cut(s) 287, 299, 438, 476
BmgT120I GGNCC 2 cut(s) 127, 442
BmiI GGNNCC 2 cut(s) 129, 443
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 7, 442
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 344
BpuEI CTTGAG 3 cut(s) 158, 182, 608
BsaHI GRCGYC 2 cut(s) 39, 375
BsaJI CCNNGG 1 cut(s) 541
BsaWI WCCGGW 2 cut(s) 214, 501
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 2 cut(s) 330, 457
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 358
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 375, 690
Bsh1236I CGCG 4 cut(s) 15, 33, 554, 680
Bsh1285I CGRYCG 2 cut(s) 372, 561
BshFI GGCC 5 cut(s) 50, 158, 273, 533, 719
BsiEI CGRYCG 2 cut(s) 372, 561
BsiHKAI GWGCWC 4 cut(s) 294, 306, 477, 483
BsiHKCI CYCGRG 4 cut(s) 287, 299, 438, 476
BsiSI CCGG 3 cut(s) 215, 502, 584
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 200
BsmBI CGTCTC 1 cut(s) 200
BsnI GGCC 5 cut(s) 50, 158, 273, 533, 719
BsoBI CYCGRG 4 cut(s) 287, 299, 438, 476
Bsp1286I GDGCHC 5 cut(s) 294, 306, 435, 477, 483
Bsp143I GATC 2 cut(s) 369, 642
Bsp68I TCGCGA 2 cut(s) 15, 554
BspACI CCGC 6 cut(s) 169, 189, 435, 534, 587, 593
BspANI GGCC 5 cut(s) 50, 158, 273, 533, 719
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 4 cut(s) 15, 33, 554, 680
BspLI GGNNCC 2 cut(s) 129, 443
BspMAI CTGCAG 2 cut(s) 393, 708
BspQI GCTCTTC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 1 cut(s) 696
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 2 cut(s) 369, 642
BssNI GRCGYC 2 cut(s) 39, 375
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 4 cut(s) 322, 415, 559, 675
Bst6I CTCTTC 2 cut(s) 246, 722
BstACI GRCGYC 2 cut(s) 39, 375
BstC8I GCNNGC 4 cut(s) 156, 280, 435, 585
BstDEI CTNAG 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 2 cut(s) 330, 457
BstFNI CGCG 4 cut(s) 15, 33, 554, 680
BstH2I RGCGCY 4 cut(s) 125, 169, 223, 285
BstHHI GCGC 6 cut(s) 113, 124, 168, 222, 284, 457
BstKTI GATC 2 cut(s) 372, 645
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 369, 642
BstMCI CGRYCG 2 cut(s) 372, 561
BstMWI GCNNNNNNNGC 4 cut(s) 47, 119, 262, 279
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 444
BstSFI CTRYAG 2 cut(s) 389, 704
BstUI CGCG 4 cut(s) 15, 33, 554, 680
BstV1I GCAGC 2 cut(s) 375, 690
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 5 cut(s) 50, 158, 273, 533, 719
BtgI CCRYGG 1 cut(s) 541
BtgZI GCGATG 2 cut(s) 30, 169
BtsCI GGATG 2 cut(s) 330, 457
BtsIMutI CAGTG 1 cut(s) 318
BtuMI TCGCGA 2 cut(s) 15, 554
Cac8I GCNNGC 4 cut(s) 156, 280, 435, 585
CaiI CAGNNNCTG 2 cut(s) 388, 496
CfoI GCGC 6 cut(s) 113, 124, 168, 222, 284, 457
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 2 cut(s) 127, 442
CseI GACGC 2 cut(s) 47, 669
Csp6I GTAC 2 cut(s) 202, 676
CviQI GTAC 2 cut(s) 202, 676
DdeI CTNAG 1 cut(s) 344
DpnI GATC 2 cut(s) 371, 644
DpnII GATC 2 cut(s) 369, 642
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 2 cut(s) 48, 531
Eam1104I CTCTTC 2 cut(s) 246, 722
EarI CTCTTC 2 cut(s) 246, 722
EciI GGCGGA 1 cut(s) 608
Ecl136II GAGCTC 3 cut(s) 292, 304, 481
Eco147I AGGCCT 1 cut(s) 273
Eco24I GRGCYC 4 cut(s) 294, 306, 435, 483
Eco47I GGWCC 2 cut(s) 127, 442
Eco47III AGCGCT 3 cut(s) 123, 221, 283
Eco53kI GAGCTC 3 cut(s) 292, 304, 481
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 4 cut(s) 287, 299, 438, 476
EcoICRI GAGCTC 3 cut(s) 292, 304, 481
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 444
EcoT38I GRGCYC 4 cut(s) 294, 306, 435, 483
Esp3I CGTCTC 1 cut(s) 200
FaiI YATR 1 cut(s) 698
FauI CCCGC 1 cut(s) 442
FblI GTMKAC 3 cut(s) 75, 417, 462
Fnu4HI GCNGC 5 cut(s) 169, 189, 389, 534, 704
FokI GGATG 2 cut(s) 317, 464
FriOI GRGCYC 4 cut(s) 294, 306, 435, 483
Fsp4HI GCNGC 5 cut(s) 169, 189, 389, 534, 704
GlaI GCGC 6 cut(s) 112, 123, 167, 221, 283, 456
GluI GCNGC 5 cut(s) 169, 189, 389, 534, 704
HaeII RGCGCY 4 cut(s) 125, 169, 223, 285
HaeIII GGCC 5 cut(s) 50, 158, 273, 533, 719
HapII CCGG 3 cut(s) 215, 502, 584
HgaI GACGC 2 cut(s) 47, 669
HhaI GCGC 6 cut(s) 113, 124, 168, 222, 284, 457
Hin1I GRCGYC 2 cut(s) 39, 375
Hin6I GCGC 6 cut(s) 111, 122, 166, 220, 282, 455
HinP1I GCGC 6 cut(s) 111, 122, 166, 220, 282, 455
HincII GTYRAC 3 cut(s) 76, 418, 463
HindII GTYRAC 3 cut(s) 76, 418, 463
HinfI GANTC 4 cut(s) 230, 493, 512, 565
HpaII CCGG 3 cut(s) 215, 502, 584
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 4 cut(s) 76, 418, 463, 541
Hpy188I TCNGA 8 cut(s) 235, 261, 492, 511, 517, 570, 685, 726
Hpy188III TCNNGA 4 cut(s) 14, 287, 553, 562
Hpy8I GTNNAC 4 cut(s) 76, 418, 463, 541
HpyAV CCTTC 3 cut(s) 97, 169, 646
HpyCH4III ACNGT 4 cut(s) 322, 415, 559, 675
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 391, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 119, 262, 279
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 2 cut(s) 39, 375
HspAI GCGC 6 cut(s) 111, 122, 166, 220, 282, 455
KroI GCCGGC 1 cut(s) 583
KroNI GCCGGC 1 cut(s) 585
Kzo9I GATC 2 cut(s) 369, 642
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 3 cut(s) 217, 289, 504
Lsp1109I GCAGC 2 cut(s) 375, 690
LweI GCATC 2 cut(s) 7, 442
MaeII ACGT 1 cut(s) 375
MalI GATC 2 cut(s) 371, 644
MbiI CCGCTC 1 cut(s) 437
MboI GATC 2 cut(s) 369, 642
MboII GAAGA 2 cut(s) 17, 263
MhlI GDGCHC 5 cut(s) 294, 306, 435, 477, 483
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 1 cut(s) 617
MluI ACGCGT 1 cut(s) 678
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 2 cut(s) 224, 506
MmeI TCCRAC 4 cut(s) 69, 534, 540, 663
Mox20I TGGCCA 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 583
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 50
MseI TTAA 1 cut(s) 579
Msp20I TGGCCA 1 cut(s) 50
MspI CCGG 3 cut(s) 215, 502, 584
MspR9I CCNGG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 4 cut(s) 15, 33, 554, 680
MwoI GCNNNNNNNGC 4 cut(s) 47, 119, 262, 279
NaeI GCCGGC 1 cut(s) 585
NdeII GATC 2 cut(s) 369, 642
NgoMIV GCCGGC 1 cut(s) 583
NlaIV GGNNCC 2 cut(s) 129, 443
NruI TCGCGA 2 cut(s) 15, 554
PaeR7I CTCGAG 1 cut(s) 476
PceI AGGCCT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 8 cut(s) 81, 231, 246, 357, 411, 423, 426, 558
PdiI GCCGGC 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 493, 565
PflFI GACNNNGTC 2 cut(s) 41, 413
PkrI GCNGC 5 cut(s) 170, 190, 390, 535, 705
Ple19I CGATCG 1 cut(s) 372
PleI GAGTC 2 cut(s) 224, 506
PpsI GAGTC 2 cut(s) 224, 506
PpuMI RGGWCCY 1 cut(s) 442
Psp124BI GAGCTC 3 cut(s) 294, 306, 483
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 129, 443
PspPI GGNCC 2 cut(s) 127, 442
PspPPI RGGWCCY 1 cut(s) 442
PspXI VCTCGAGB 1 cut(s) 476
PstI CTGCAG 2 cut(s) 393, 708
PstNI CAGNNNCTG 2 cut(s) 388, 496
PsyI GACNNNGTC 2 cut(s) 41, 413
PvuI CGATCG 1 cut(s) 372
RruI TCGCGA 2 cut(s) 15, 554
RsaI GTAC 2 cut(s) 203, 677
RsaNI GTAC 2 cut(s) 202, 676
SacI GAGCTC 3 cut(s) 294, 306, 483
SalI GTCGAC 3 cut(s) 74, 416, 461
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 5 cut(s) 169, 189, 389, 534, 704
Sau3AI GATC 2 cut(s) 369, 642
Sau96I GGNCC 2 cut(s) 127, 442
SchI GAGTC 2 cut(s) 224, 506
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 5 cut(s) 294, 306, 435, 477, 483
SfaNI GCATC 2 cut(s) 7, 442
SfcI CTRYAG 2 cut(s) 389, 704
Sfr274I CTCGAG 1 cut(s) 476
SgrDI CGTCGACG 1 cut(s) 416
SinI GGWCC 2 cut(s) 127, 442
SlaI CTCGAG 1 cut(s) 476
SmlI CTYRAG 4 cut(s) 173, 197, 476, 623
SmoI CTYRAG 4 cut(s) 173, 197, 476, 623
Sse9I AATT 1 cut(s) 617
SseBI AGGCCT 1 cut(s) 273
SsiI CCGC 6 cut(s) 169, 189, 435, 534, 587, 593
SstI GAGCTC 3 cut(s) 294, 306, 483
StuI AGGCCT 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 444
TaaI ACNGT 4 cut(s) 322, 415, 559, 675
TaiI ACGT 1 cut(s) 378
TaqI TCGA 9 cut(s) 75, 133, 162, 240, 372, 417, 462, 477, 561
TaqII GACCGA 1 cut(s) 416
TasI AATT 1 cut(s) 617
TauI GCSGC 3 cut(s) 171, 191, 536
TfiI GAWTC 2 cut(s) 493, 565
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 1 cut(s) 325
TseI GCWGC 2 cut(s) 388, 703
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 2 cut(s) 41, 413
VpaK11BI GGWCC 2 cut(s) 127, 442
XhoI CTCGAG 1 cut(s) 476
XmiI GTMKAC 3 cut(s) 75, 417, 462
XmnI GAANNNNTTC 1 cut(s) 255
ZraI GACGTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.