Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009600

Physical Location & Seq

Genomic Coordinates Forward (+)

34569592 .. 34593155

Gene Structure 23564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG319300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACAGGGACGAGTCATTGCAATCTGAAAGAAGGGTCACAGAGGAGAGAAGAAACGCAGATAGAGGAATTAGAAATACTACTCAACCATAAACAACCAAAGGCTGCCACGCTGCTCATGGGAGAAATTGAGGTCTCCTTTCATTTACCCGAAGAACTAACACTACATGAGTTAGATCTTGAGAAGACGGCCTTTGCAGCTTTTATGGGTAAGGCAAGTGCTGCTGCCTTCTCTTTTCTTAATTTACAAAGTGGAATTCTGAGGGGTTCTAGAAGGGAGAGACTGTTGAGCAAGTTTGTGGAAAATGAATGTGAAAAGATAGATCGGCTTATGGAACTTTATATGAGATATTTGAATAGAGTTAAAGCTGAAACTGACCGAATTGACCAGCTTGATCTTGATGATTTAGAGATGGATGAAGAGGAAATATACATTCGGAAGCTTGAAGCTGGACTTTATACCCTTCAGTTGATTGCTGTTATTTTGGGTCATCTTTGGTGCTCTGAGCATCCTCAAATGAGAGGAAGAATTGAACTACTTCTCAAGCAGCAAAAGCTTACTAAGAAGGATGTTAAGGATATACTTCAGGAGTATCACGACAACATCGGTGATATGGAAGGAGCGGAAGAAAAAGAGCGATCACAGGCAAAGATTCAAAAGTTCATCTCAGCTTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTNNBL

Protein Analysis

226

Amino Acids

26.25

Weight (kDa)

5.17

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTNNBL	PF08216	81 - 196	8.4e-29	Catenin-beta-like, Arm-motif containing nuclear

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02710
fragaria_vesca	FvH4_1g27560
malus_domestica	MD11G1181900.v1.1
prunus_persica	Prupe.3G013000_v2.0.a1
pyrus_communis	pycom11g15680
rosa_chinensis	RchiOBHm_Chr3g0487991
rosa_laevigata	RLG00000021476 RLG00000022950
rosa_multiflora	Rmu_co8254523.1_g000001 Rmu_sc0007320.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394360
rosa_rugosa	Rorug03G0237700 Rorug03G0237700 Rorug03G0237800 Rorug03G0237900 Rorug03G0237900
rosa_samantha	Rh3AG285700 Rh3BG322500 Rh3CG321200 Rh3DG319300 Rh7AG275700
rosa_wichuraiana	Rw3G025330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	623
AciI	CCGC	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	449, 569
AgsI	TTSAA	4 cut(s)	355, 446, 533, 656
AluBI	AGCT	7 cut(s)	200, 368, 391, 442, 449, 556, 671
AluI	AGCT	7 cut(s)	200, 368, 391, 442, 449, 556, 671
Alw21I	GWGCWC	1 cut(s)	503
Alw26I	GTCTC	2 cut(s)	139, 274
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	6 cut(s)	104, 112, 197, 221, 224, 547
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	503
BbvI	GCAGC	6 cut(s)	91, 99, 208, 209, 211, 559
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	139, 274
BfaI	CTAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	6 cut(s)	105, 113, 198, 222, 225, 548
BlsI	GCNGC	6 cut(s)	106, 114, 199, 223, 226, 549
BmsI	GCATC	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	200, 527
BsaI	GGTCTC	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bse3DI	GCAATG	1 cut(s)	16
BseGI	GGATG	3 cut(s)	421, 508, 574
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	251, 495, 681
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	6 cut(s)	91, 99, 208, 209, 211, 559
BshFI	GGCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	2 cut(s)	139, 274
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	4 cut(s)	175, 322, 394, 638
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	3 cut(s)	252, 496, 680
BspTNI	GGTCTC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	16
BssMI	GATC	4 cut(s)	175, 322, 394, 638
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	260, 504, 561, 667
BstF5I	GGATG	3 cut(s)	421, 508, 574
BstKTI	GATC	4 cut(s)	178, 325, 397, 641
BstMAI	GTCTC	2 cut(s)	139, 274
BstMBI	GATC	4 cut(s)	175, 322, 394, 638
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 221, 553
BstV1I	GCAGC	6 cut(s)	91, 99, 208, 209, 211, 559
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	3 cut(s)	421, 508, 574
CviAII	CATG	2 cut(s)	118, 167
DdeI	CTNAG	4 cut(s)	260, 504, 561, 667
DpnI	GATC	4 cut(s)	177, 324, 396, 640
DpnII	GATC	4 cut(s)	175, 322, 394, 638
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	449, 569
EcoRI	GAATTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	121, 170
FalI	AAGNNNNNCTT	4 cut(s)	176, 208, 438, 470
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	117, 166
Fnu4HI	GCNGC	6 cut(s)	105, 113, 198, 222, 225, 548
FokI	GGATG	3 cut(s)	428, 495, 581
Fsp4HI	GCNGC	6 cut(s)	105, 113, 198, 222, 225, 548
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	6 cut(s)	105, 113, 198, 222, 225, 548
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	121, 170
HindIII	AAGCTT	2 cut(s)	440, 554
HinfI	GANTC	2 cut(s)	13, 652
HphI	GGTGA	1 cut(s)	620
Hpy188I	TCNGA	4 cut(s)	27, 261, 438, 505
Hpy188III	TCNNGA	5 cut(s)	179, 270, 398, 587, 596
HpyAV	CCTTC	6 cut(s)	26, 238, 267, 473, 559, 611
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	21, 197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 221, 553
HpyF3I	CTNAG	4 cut(s)	260, 504, 561, 667
Hsp92II	CATG	2 cut(s)	121, 170
Kzo9I	GATC	4 cut(s)	175, 322, 394, 638
LmnI	GCTCC	1 cut(s)	620
LpnPI	CCDG	4 cut(s)	401, 435, 572, 629
Lsp1109I	GCAGC	6 cut(s)	91, 99, 208, 209, 211, 559
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	4 cut(s)	177, 324, 396, 640
MbiI	CCGCTC	1 cut(s)	623
MboI	GATC	4 cut(s)	175, 322, 394, 638
MboII	GAAGA	6 cut(s)	62, 164, 196, 431, 537, 638
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	6 cut(s)	68, 126, 241, 255, 381, 528
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	7 cut(s)	36, 58, 124, 255, 415, 515, 522
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	3 cut(s)	240, 363, 573
MwoI	GCNNNNNNNGC	3 cut(s)	197, 221, 553
NdeII	GATC	4 cut(s)	175, 322, 394, 638
NlaIII	CATG	2 cut(s)	121, 170
NmuCI	GTSAC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	652
PkrI	GCNGC	6 cut(s)	106, 114, 199, 223, 226, 549
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PsuI	RGATCY	1 cut(s)	175
SaqAI	TTAA	3 cut(s)	240, 363, 573
SatI	GCNGC	6 cut(s)	105, 113, 198, 222, 225, 548
Sau3AI	GATC	4 cut(s)	175, 322, 394, 638
SchI	GAGTC	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	503
SetI	ASST	8 cut(s)	135, 202, 370, 393, 444, 451, 558, 673
SfaNI	GCATC	1 cut(s)	517
SmlI	CTYRAG	2 cut(s)	179, 542
SmoI	CTYRAG	2 cut(s)	179, 542
Sse9I	AATT	6 cut(s)	68, 126, 241, 255, 381, 528
SsiI	CCGC	1 cut(s)	623
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	285
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	6 cut(s)	68, 126, 241, 255, 381, 528
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	3 cut(s)	240, 363, 573
Tru9I	TTAA	3 cut(s)	240, 363, 573
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	6 cut(s)	104, 112, 197, 221, 224, 547
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	131, 321, 432, 652
XapI	RAATTY	1 cut(s)	255
XbaI	TCTAGA	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.