RLG00000022376

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010397
Physical Location & Seq
Forward (+)
82946013 .. 82951065
5053 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022376

Sequence Viewer

Length: 1572 bp
ATGGGAAGTGCATTCAATCCTCAGATTTTAGTGGAGAAGCTAGCCAAGCTCAACAGCTCCCAAGCGAGCATAGAGACTTTATCACATTGGTGCATTTTCCACATGAATAAAGCAAGACAAGTTGTTGAAACTTGGGCCAGGCAATTTCATTCTTCTCCGCGTGAACAAAGATTGGCTTTTCTGTATCTTGCAAATGATATTTTACAGAACAGTAGGCGAAAAGGTGCAGAGTTTGTTGGTGAGTTCTGGAAGGTACTTCCAGATGCTCTTCGCGATGTAATTGAGAGTGGAGATGAAGTTGGAAGAAATGCGGCACAACGACTGATTAATATATGGGAAGAAAGAAAAGTGTTTGGTTCTCGTGGCCAAATTCTAAAGGAAGAGTTTGTGGGAAGGCAGTTGGAAAGTAATAATAGAAATGGGAAGCATTTATTGGTTAGACCGCCTGCTGGAACTTCATTGGACAAGATAGTATCAGATTACCAAGCTATTTATGGCCAGATGGATGAAGACACTATCTTGAGAAAATGTAAGAATGCAATCAACTGTCTTGAGAAAGCGGACAAGGAGGTTGGTGGTGATTTCAATTCAGGGCAATTTCAAGGAGAAGCATTTGCACAGGAGGTACATGGGCAGCATGCCATACTAAGGGACTGTATTGATCAACTAACTGCAGTGGAATCATCAAGAGCTACTCTTGTGTCTCATCTGAAAGAGGCTCTTCAGGAGCAGGAATTCAAGTTGGATCAACTCCGAAACCAACTTCAGGCGGCACAGTCACAGTCAGAACAAGCCAGTAATTTCTGCCGTCAGTTAATGAGTAGCAGCAATAATTTGCAGCCGATAGACCAGAACTCAAAGGAAGCTCATACCTCTGCAGGACCTCACAGCTTTATGGCAGTGGGTAGAGAGCAATCAGCTCCAGTAATGTACACACAGCAGGTTCCTTTTACCGAAAAGTCTGGTCATGTGGAGGAAGATCCTCGCAAGTCTGCAGCTGCTGCAGTGGCAGCAAAGCTAACTGCATCAACATCCTCAGCCCAGATGCTCTCTTATGTCCTCTCCTCTCTGGCATCAGAGGGTGTCATCAGCAATCCAATTAAAGGGTCTTCTGGTGATTATCCATCTGAAAAGAGACTTAAACTCGATAATGATAACCAATTGTCACCTTATGTTCCCCAGAATCCTAACCCATCTGCATCTTCTCCCTTCTCACATTCTGAATCACTCCAGCTGAATGTGTCTACCACCAGCCAACAATATACTCCTACCTTGCCGCCACTTCCCCCATCATCTCCTCCACCATTGCCACCGTTACCACCAGTATCACAGTACCCAGTGTCCCAGTATTTGCAGGCTCCTGGATCAACAACTTCCGTATCTTTTAGTTATAGCATGGCCCAGCCACAGACTTCCCCAGTGCCTGGTTATACACCAGTGGGAGGAGCTCAAGTGAATGGGCTTCCACCTTTGATGGCACCAGCAAATCCTTATCAGAGTTTTCAGGGTTCAGATGGTAAATTTTACAACCAACAATCATCGATGCAATTGGCGCCAATGTCTAGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

524

Amino Acids

57.42

Weight (kDa)

6.29

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 9 - 120 3.9e-37 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 931
AccB1I GGYRCC 2 cut(s) 1477, 1552
AccB7I CCANNNNNTGG 1 cut(s) 1424
AccI GTMKAC 1 cut(s) 1244
AccII CGCG 2 cut(s) 160, 273
AciI CCGC 6 cut(s) 158, 311, 443, 560, 770, 1277
AclWI GGATC 3 cut(s) 753, 974, 1372
AcoI YGGCCR 2 cut(s) 364, 496
AcsI RAATTY 3 cut(s) 369, 734, 1520
AcuI CTGAAG 2 cut(s) 707, 749
AcyI GRCGYC 1 cut(s) 1553
AfaI GTAC 4 cut(s) 255, 627, 932, 1334
AfiI CCNNNNNNNGG 6 cut(s) 449, 648, 766, 1103, 1424, 1442
AgsI TTSAA 5 cut(s) 16, 128, 586, 602, 739
AjnI CCWGG 3 cut(s) 137, 1360, 1423
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AleI CACNNNNGTG 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 1450
Alw26I GTCTC 3 cut(s) 68, 708, 1129
AlwI GGATC 3 cut(s) 753, 974, 1372
AlwNI CAGNNNCTG 2 cut(s) 1001, 1424
AoxI GGCC 4 cut(s) 135, 364, 496, 1398
ApeKI GCWGC 7 cut(s) 634, 825, 838, 995, 998, 1001, 1010
ApoI RAATTY 3 cut(s) 369, 734, 1520
AseI ATTAAT 1 cut(s) 327
AspLEI GCGC 1 cut(s) 1555
AspS9I GGNCC 3 cut(s) 135, 881, 1399
AsuHPI GGTGA 4 cut(s) 251, 590, 1127, 1158
AsuNHI GCTAGC 1 cut(s) 40
AvaII GGWCC 1 cut(s) 881
BaeI ACNNNNGTAYC 2 cut(s) 1362, 1395
BalI TGGCCA 2 cut(s) 366, 498
BanI GGYRCC 2 cut(s) 1477, 1552
BanII GRGCYC 1 cut(s) 1450
BauI CACGAG 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 516, 1101
Bbv12I GWGCWC 1 cut(s) 1450
BbvCI CCTCAGC 1 cut(s) 1036
BbvI GCAGC 7 cut(s) 646, 837, 850, 985, 988, 1007, 1022
BccI CCATC 6 cut(s) 496, 1132, 1201, 1297, 1468, 1508
BceAI ACGGC 1 cut(s) 792
BciT130I CCWGG 3 cut(s) 139, 1362, 1425
BclI TGATCA 1 cut(s) 661
BcoDI GTCTC 3 cut(s) 68, 708, 1129
BfaI CTAG 2 cut(s) 41, 1563
BfmI CTRYAG 4 cut(s) 672, 876, 993, 1002
BfoI RGCGCY 1 cut(s) 1556
BfuAI ACCTGC 1 cut(s) 931
Bme1390I CCNGG 3 cut(s) 139, 1362, 1425
Bme18I GGWCC 1 cut(s) 881
BmgT120I GGNCC 3 cut(s) 135, 881, 1399
BmiI GGNNCC 4 cut(s) 945, 1359, 1479, 1554
BmrFI CCNGG 3 cut(s) 139, 1362, 1425
BmrI ACTGGG 3 cut(s) 1331, 1339, 1412
BmsI GCATC 6 cut(s) 253, 1034, 1035, 1082, 1208, 1533
BmtI GCTAGC 1 cut(s) 44
BmuI ACTGGG 3 cut(s) 1331, 1339, 1412
BpiI GAAGAC 2 cut(s) 516, 1101
BpmI CTGGAG 2 cut(s) 906, 1214
Bpu10I CCTNAGC 1 cut(s) 1036
BpuEI CTTGAG 3 cut(s) 541, 572, 1434
Bsa29I ATCGAT 1 cut(s) 1541
BsaHI GRCGYC 1 cut(s) 1553
BsaXI ACNNNNNCTCC 4 cut(s) 282, 312, 1437, 1467
Bsc4I CCNNNNNNNGG 6 cut(s) 449, 648, 766, 1103, 1424, 1442
Bse1I ACTGG 7 cut(s) 795, 923, 1322, 1337, 1345, 1418, 1436
Bse3DI GCAATG 1 cut(s) 1304
BseBI CCWGG 3 cut(s) 139, 1362, 1425
BseCI ATCGAT 1 cut(s) 1541
BseGI GGATG 2 cut(s) 511, 1031
BseLI CCNNNNNNNGG 6 cut(s) 449, 648, 766, 1103, 1424, 1442
BseMI GCAATG 1 cut(s) 1304
BseMII CTCAG 2 cut(s) 35, 1050
BseNI ACTGG 7 cut(s) 795, 923, 1322, 1337, 1345, 1418, 1436
BseRI GAGGAG 3 cut(s) 1054, 1287, 1458
BseXI GCAGC 7 cut(s) 646, 837, 850, 985, 988, 1007, 1022
BseYI CCCAGC 1 cut(s) 1401
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 2 cut(s) 160, 273
BshFI GGCC 4 cut(s) 137, 366, 498, 1400
BshNI GGYRCC 2 cut(s) 1477, 1552
BshVI ATCGAT 1 cut(s) 1541
BsiHKAI GWGCWC 1 cut(s) 1450
BslFI GGGAC 2 cut(s) 665, 1327
BslI CCNNNNNNNGG 6 cut(s) 449, 648, 766, 1103, 1424, 1442
BsmAI GTCTC 3 cut(s) 68, 708, 1129
BsmFI GGGAC 2 cut(s) 665, 1327
BsmI GAATGC 2 cut(s) 11, 541
BsnI GGCC 4 cut(s) 137, 366, 498, 1400
Bsp1286I GDGCHC 1 cut(s) 1450
Bsp1407I TGTACA 1 cut(s) 930
Bsp143I GATC 4 cut(s) 661, 745, 979, 1364
Bsp68I TCGCGA 1 cut(s) 273
BspACI CCGC 6 cut(s) 158, 311, 443, 560, 770, 1277
BspANI GGCC 4 cut(s) 137, 366, 498, 1400
BspCNI CTCAG 2 cut(s) 34, 1049
BspDI ATCGAT 1 cut(s) 1541
BspFNI CGCG 2 cut(s) 160, 273
BspLI GGNNCC 4 cut(s) 945, 1359, 1479, 1554
BspMAI CTGCAG 4 cut(s) 676, 880, 997, 1006
BspMI ACCTGC 1 cut(s) 931
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 3 cut(s) 753, 974, 1372
BspQI GCTCTTC 2 cut(s) 273, 726
BspT107I GGYRCC 2 cut(s) 1477, 1552
BsrDI GCAATG 1 cut(s) 1304
BsrGI TGTACA 1 cut(s) 930
BsrI ACTGG 7 cut(s) 795, 923, 1322, 1337, 1345, 1418, 1436
BssMI GATC 4 cut(s) 661, 745, 979, 1364
BssNI GRCGYC 1 cut(s) 1553
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 3 cut(s) 139, 1362, 1425
Bst4CI ACNGT 7 cut(s) 212, 548, 656, 777, 783, 1314, 1332
Bst6I CTCTTC 3 cut(s) 273, 375, 726
BstACI GRCGYC 1 cut(s) 1553
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstAUI TGTACA 1 cut(s) 930
BstC8I GCNNGC 5 cut(s) 42, 67, 447, 639, 1356
BstDEI CTNAG 3 cut(s) 21, 647, 1036
BstF5I GGATG 2 cut(s) 511, 1031
BstFNI CGCG 2 cut(s) 160, 273
BstH2I RGCGCY 1 cut(s) 1556
BstHHI GCGC 1 cut(s) 1555
BstKTI GATC 4 cut(s) 664, 748, 982, 1367
BstMAI GTCTC 3 cut(s) 68, 708, 1129
BstMBI GATC 4 cut(s) 661, 745, 979, 1364
BstMWI GCNNNNNNNGC 5 cut(s) 46, 1001, 1007, 1010, 1552
BstNI CCWGG 3 cut(s) 139, 1362, 1425
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 3 cut(s) 137, 1360, 1423
BstSFI CTRYAG 4 cut(s) 672, 876, 993, 1002
BstUI CGCG 2 cut(s) 160, 273
BstV1I GCAGC 7 cut(s) 646, 837, 850, 985, 988, 1007, 1022
BstV2I GAAGAC 2 cut(s) 516, 1101
BstX2I RGATCY 1 cut(s) 979
BstYI RGATCY 1 cut(s) 979
Bsu15I ATCGAT 1 cut(s) 1541
BsuRI GGCC 4 cut(s) 137, 366, 498, 1400
BsuTUI ATCGAT 1 cut(s) 1541
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 2 cut(s) 511, 1031
BtsI GCAGTG 3 cut(s) 681, 906, 1011
BtsIMutI CAGTG 6 cut(s) 681, 906, 1011, 1344, 1425, 1443
BtuMI TCGCGA 1 cut(s) 273
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 5 cut(s) 42, 67, 447, 639, 1356
CaiI CAGNNNCTG 2 cut(s) 1001, 1424
CfoI GCGC 1 cut(s) 1555
Cfr13I GGNCC 3 cut(s) 135, 881, 1399
ClaI ATCGAT 1 cut(s) 1541
Csp6I GTAC 4 cut(s) 254, 626, 931, 1333
CviAII CATG 5 cut(s) 103, 629, 638, 968, 1396
CviQI GTAC 4 cut(s) 254, 626, 931, 1333
DdeI CTNAG 3 cut(s) 21, 647, 1036
DinI GGCGCC 1 cut(s) 1554
DpnI GATC 4 cut(s) 663, 747, 981, 1366
DpnII GATC 4 cut(s) 661, 745, 979, 1364
EaeI YGGCCR 2 cut(s) 364, 496
Eam1104I CTCTTC 3 cut(s) 273, 375, 726
EarI CTCTTC 3 cut(s) 273, 375, 726
Ecl136II GAGCTC 1 cut(s) 1448
Eco24I GRGCYC 1 cut(s) 1450
Eco47I GGWCC 1 cut(s) 881
Eco53kI GAGCTC 1 cut(s) 1448
Eco57I CTGAAG 2 cut(s) 707, 749
EcoICRI GAGCTC 1 cut(s) 1448
EcoO109I RGGNCCY 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 3 cut(s) 137, 1360, 1423
EcoT38I GRGCYC 1 cut(s) 1450
EgeI GGCGCC 1 cut(s) 1554
EheI GGCGCC 1 cut(s) 1554
FaeI CATG 5 cut(s) 106, 632, 641, 971, 1399
FalI AAGNNNNNCTT 4 cut(s) 160, 192, 705, 737
FaqI GGGAC 2 cut(s) 665, 1327
FatI CATG 5 cut(s) 102, 628, 637, 967, 1395
FbaI TGATCA 1 cut(s) 661
FblI GTMKAC 1 cut(s) 1244
FokI GGATG 2 cut(s) 518, 1018
FriOI GRGCYC 1 cut(s) 1450
FspBI CTAG 2 cut(s) 41, 1563
GlaI GCGC 1 cut(s) 1554
GsaI CCCAGC 1 cut(s) 1405
GsuI CTGGAG 2 cut(s) 906, 1214
HaeII RGCGCY 1 cut(s) 1556
HaeIII GGCC 4 cut(s) 137, 366, 498, 1400
HhaI GCGC 1 cut(s) 1555
Hin1I GRCGYC 1 cut(s) 1553
Hin1II CATG 5 cut(s) 106, 632, 641, 971, 1399
Hin6I GCGC 1 cut(s) 1553
HinP1I GCGC 1 cut(s) 1553
HinfI GANTC 3 cut(s) 680, 1183, 1223
HphI GGTGA 4 cut(s) 251, 590, 1127, 1158
Hpy166II GTNNAC 3 cut(s) 164, 933, 1245
Hpy188III TCNNGA 7 cut(s) 247, 260, 272, 520, 551, 687, 725
Hpy8I GTNNAC 3 cut(s) 164, 933, 1245
HpyAV CCTTC 3 cut(s) 244, 387, 1219
HpyCH4III ACNGT 7 cut(s) 212, 548, 656, 777, 783, 1314, 1332
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 1001, 1007, 1010, 1552
HpyF3I CTNAG 3 cut(s) 21, 647, 1036
Hsp92I GRCGYC 1 cut(s) 1553
Hsp92II CATG 5 cut(s) 106, 632, 641, 971, 1399
HspAI GCGC 1 cut(s) 1553
KasI GGCGCC 1 cut(s) 1552
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 4 cut(s) 661, 745, 979, 1364
LguI GCTCTTC 2 cut(s) 273, 726
LmnI GCTCC 5 cut(s) 62, 727, 925, 1363, 1445
Lsp1109I GCAGC 7 cut(s) 646, 837, 850, 985, 988, 1007, 1022
LweI GCATC 6 cut(s) 253, 1034, 1035, 1082, 1208, 1533
MaeI CTAG 2 cut(s) 41, 1563
MaeIII GTNAC 3 cut(s) 777, 1164, 1314
MalI GATC 4 cut(s) 663, 747, 981, 1366
MboI GATC 4 cut(s) 661, 745, 979, 1364
MfeI CAATTG 2 cut(s) 1160, 1547
MflI RGATCY 1 cut(s) 979
MhlI GDGCHC 1 cut(s) 1450
MlsI TGGCCA 2 cut(s) 366, 498
MluNI TGGCCA 2 cut(s) 366, 498
Mly113I GGCGCC 1 cut(s) 1553
MmeI TCCRAC 3 cut(s) 280, 381, 723
Mox20I TGGCCA 2 cut(s) 366, 498
MscI TGGCCA 2 cut(s) 366, 498
MseI TTAA 4 cut(s) 327, 815, 1101, 1140
MslI CAYNNNNRTG 1 cut(s) 88
Msp20I TGGCCA 2 cut(s) 366, 498
MspA1I CMGCKG 2 cut(s) 998, 1234
MspR9I CCNGG 3 cut(s) 139, 1362, 1425
MunI CAATTG 2 cut(s) 1160, 1547
Mva1269I GAATGC 2 cut(s) 11, 541
MvaI CCWGG 3 cut(s) 139, 1362, 1425
MvnI CGCG 2 cut(s) 160, 273
MwoI GCNNNNNNNGC 5 cut(s) 46, 1001, 1007, 1010, 1552
NarI GGCGCC 1 cut(s) 1553
NdeII GATC 4 cut(s) 661, 745, 979, 1364
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 5 cut(s) 106, 632, 641, 971, 1399
NlaIV GGNNCC 4 cut(s) 945, 1359, 1479, 1554
NmuCI GTSAC 2 cut(s) 777, 1164
NruI TCGCGA 1 cut(s) 273
NspI RCATGY 1 cut(s) 641
OliI CACNNNNGTG 1 cut(s) 88
PaeI GCATGC 1 cut(s) 641
PciSI GCTCTTC 2 cut(s) 273, 726
PctI GAATGC 2 cut(s) 11, 541
PfeI GAWTC 3 cut(s) 680, 1183, 1223
PflMI CCANNNNNTGG 1 cut(s) 1424
PfoI TCCNGGA 1 cut(s) 1360
PluTI GGCGCC 1 cut(s) 1556
PpuMI RGGWCCY 1 cut(s) 881
PshBI ATTAAT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 1450
Psp5II RGGWCCY 1 cut(s) 881
Psp6I CCWGG 3 cut(s) 137, 1360, 1423
PspFI CCCAGC 1 cut(s) 1401
PspGI CCWGG 3 cut(s) 137, 1360, 1423
PspN4I GGNNCC 4 cut(s) 945, 1359, 1479, 1554
PspPI GGNCC 3 cut(s) 135, 881, 1399
PspPPI RGGWCCY 1 cut(s) 881
PstI CTGCAG 4 cut(s) 676, 880, 997, 1006
PstNI CAGNNNCTG 2 cut(s) 1001, 1424
PsuI RGATCY 1 cut(s) 979
PvuII CAGCTG 2 cut(s) 998, 1234
RruI TCGCGA 1 cut(s) 273
RsaI GTAC 4 cut(s) 255, 627, 932, 1334
RsaNI GTAC 4 cut(s) 254, 626, 931, 1333
RseI CAYNNNNRTG 1 cut(s) 88
SacI GAGCTC 1 cut(s) 1450
SapI GCTCTTC 2 cut(s) 273, 726
SaqAI TTAA 4 cut(s) 327, 815, 1101, 1140
Sau3AI GATC 4 cut(s) 661, 745, 979, 1364
Sau96I GGNCC 3 cut(s) 135, 881, 1399
ScrFI CCNGG 3 cut(s) 139, 1362, 1425
SduI GDGCHC 1 cut(s) 1450
SfaNI GCATC 6 cut(s) 253, 1034, 1035, 1082, 1208, 1533
SfcI CTRYAG 4 cut(s) 672, 876, 993, 1002
SfoI GGCGCC 1 cut(s) 1554
SinI GGWCC 1 cut(s) 881
SmiMI CAYNNNNRTG 1 cut(s) 88
SmlI CTYRAG 3 cut(s) 520, 551, 1449
SmoI CTYRAG 3 cut(s) 520, 551, 1449
SphI GCATGC 1 cut(s) 641
SsiI CCGC 6 cut(s) 158, 311, 443, 560, 770, 1277
SspDI GGCGCC 1 cut(s) 1552
SspMI CTAG 2 cut(s) 41, 1563
SstI GAGCTC 1 cut(s) 1450
StyD4I CCNGG 3 cut(s) 137, 1360, 1423
TaaI ACNGT 7 cut(s) 212, 548, 656, 777, 783, 1314, 1332
TaqI TCGA 2 cut(s) 1146, 1541
TatI WGTACW 1 cut(s) 930
TauI GCSGC 3 cut(s) 314, 773, 1279
TfiI GAWTC 3 cut(s) 680, 1183, 1223
Tru1I TTAA 4 cut(s) 327, 815, 1101, 1140
Tru9I TTAA 4 cut(s) 327, 815, 1101, 1140
TscAI CASTG 6 cut(s) 681, 906, 1011, 1344, 1425, 1443
TseFI GTSAC 2 cut(s) 777, 1164
TseI GCWGC 7 cut(s) 634, 825, 838, 995, 998, 1001, 1010
Tsp45I GTSAC 2 cut(s) 777, 1164
TspDTI ATGAA 5 cut(s) 119, 137, 309, 447, 522
TspGWI ACGGA 1 cut(s) 1366
TspRI CASTG 6 cut(s) 681, 906, 1011, 1344, 1425, 1443
Van91I CCANNNNNTGG 1 cut(s) 1424
VpaK11BI GGWCC 1 cut(s) 881
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 3 cut(s) 369, 734, 1520
XceI RCATGY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 1244
XspI CTAG 2 cut(s) 41, 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.