Regulation of nuclear pre-mRNA domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G26990 AT3G26990 |
| fragaria_vesca | FvH4_6g53890 FvH4_6g53890 |
| malus_domestica | MD09G1007500.v1.1 MD17G1011400.v1.1 |
| prunus_persica | Prupe.3G309500_v2.0.a1 Prupe.3G309500_v2.0.a1 Prupe.3G309500_v2.0.a1 |
| pyrus_communis | pycom111g00580 pycom17g00610 |
| rosa_chinensis | RchiOBHm_Chr2g0176051 |
| rosa_laevigata | RLG00000022376 |
| rosa_multiflora | Rmu_sc0033063.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00076820 |
| rosa_rugosa | Rorug02G0590000 |
| rosa_samantha | Rh2AG668800 Rh2BG680400 Rh2CG643300 Rh2DG694100 |
| rosa_wichuraiana | Rw2G054850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 931 |
| AccB1I | GGYRCC | 2 cut(s) | 1477, 1552 |
| AccI | GTMKAC | 1 cut(s) | 1244 |
| AccII | CGCG | 2 cut(s) | 160, 273 |
| AciI | CCGC | 3 cut(s) | 158, 443, 770 |
| AclWI | GGATC | 3 cut(s) | 753, 974, 1372 |
| AcoI | YGGCCR | 2 cut(s) | 364, 496 |
| AcsI | RAATTY | 3 cut(s) | 369, 734, 1520 |
| AcuI | CTGAAG | 2 cut(s) | 707, 749 |
| AcyI | GRCGYC | 1 cut(s) | 1553 |
| AfaI | GTAC | 3 cut(s) | 255, 627, 932 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 449, 648, 766, 1103, 1442 |
| AgsI | TTSAA | 5 cut(s) | 16, 128, 586, 602, 739 |
| AjnI | CCWGG | 4 cut(s) | 137, 448, 1360, 1423 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 416, 448 |
| AleI | CACNNNNGTG | 1 cut(s) | 88 |
| Alw21I | GWGCWC | 1 cut(s) | 1450 |
| Alw26I | GTCTC | 3 cut(s) | 68, 708, 1129 |
| AlwI | GGATC | 3 cut(s) | 753, 974, 1372 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1001, 1424 |
| AoxI | GGCC | 4 cut(s) | 135, 364, 496, 1398 |
| ApeKI | GCWGC | 9 cut(s) | 311, 634, 825, 838, 878, 995, 998, 1001, 1010 |
| ApoI | RAATTY | 3 cut(s) | 369, 734, 1520 |
| AseI | ATTAAT | 1 cut(s) | 327 |
| AspLEI | GCGC | 1 cut(s) | 1555 |
| AspS9I | GGNCC | 2 cut(s) | 135, 1399 |
| AsuHPI | GGTGA | 4 cut(s) | 251, 590, 1127, 1158 |
| AsuNHI | GCTAGC | 1 cut(s) | 40 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1362, 1395 |
| BalI | TGGCCA | 2 cut(s) | 366, 498 |
| BanI | GGYRCC | 2 cut(s) | 1477, 1552 |
| BanII | GRGCYC | 1 cut(s) | 1450 |
| BauI | CACGAG | 1 cut(s) | 360 |
| BbsI | GAAGAC | 2 cut(s) | 516, 1101 |
| Bbv12I | GWGCWC | 1 cut(s) | 1450 |
| BbvCI | CCTCAGC | 1 cut(s) | 1036 |
| BbvI | GCAGC | 9 cut(s) | 323, 646, 837, 850, 890, 985, 988, 1007, 1022 |
| BccI | CCATC | 5 cut(s) | 496, 1132, 1297, 1468, 1508 |
| BceAI | ACGGC | 1 cut(s) | 792 |
| BciT130I | CCWGG | 4 cut(s) | 139, 450, 1362, 1425 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcoDI | GTCTC | 3 cut(s) | 68, 708, 1129 |
| BfaI | CTAG | 2 cut(s) | 41, 1563 |
| BfmI | CTRYAG | 4 cut(s) | 672, 876, 993, 1002 |
| BfoI | RGCGCY | 1 cut(s) | 1556 |
| BfuAI | ACCTGC | 1 cut(s) | 931 |
| Bme1390I | CCNGG | 4 cut(s) | 139, 450, 1362, 1425 |
| BmgT120I | GGNCC | 2 cut(s) | 135, 1399 |
| BmiI | GGNNCC | 4 cut(s) | 945, 1359, 1479, 1554 |
| BmrFI | CCNGG | 4 cut(s) | 139, 450, 1362, 1425 |
| BmrI | ACTGGG | 2 cut(s) | 1331, 1339 |
| BmsI | GCATC | 7 cut(s) | 253, 598, 1034, 1035, 1082, 1208, 1533 |
| BmtI | GCTAGC | 1 cut(s) | 44 |
| BmuI | ACTGGG | 2 cut(s) | 1331, 1339 |
| BpiI | GAAGAC | 2 cut(s) | 516, 1101 |
| BpmI | CTGGAG | 2 cut(s) | 906, 1214 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1036 |
| BpuEI | CTTGAG | 3 cut(s) | 541, 572, 1434 |
| Bsa29I | ATCGAT | 1 cut(s) | 1541 |
| BsaHI | GRCGYC | 1 cut(s) | 1553 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 282, 312, 1437, 1467 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 449, 648, 766, 1103, 1442 |
| Bse1I | ACTGG | 6 cut(s) | 795, 923, 1322, 1337, 1345, 1436 |
| Bse3DI | GCAATG | 1 cut(s) | 1304 |
| BseBI | CCWGG | 4 cut(s) | 139, 450, 1362, 1425 |
| BseCI | ATCGAT | 1 cut(s) | 1541 |
| BseGI | GGATG | 1 cut(s) | 511 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 449, 648, 766, 1103, 1442 |
| BseMI | GCAATG | 1 cut(s) | 1304 |
| BseMII | CTCAG | 3 cut(s) | 35, 1050, 1431 |
| BseNI | ACTGG | 6 cut(s) | 795, 923, 1322, 1337, 1345, 1436 |
| BseRI | GAGGAG | 3 cut(s) | 1054, 1287, 1458 |
| BseXI | GCAGC | 9 cut(s) | 323, 646, 837, 850, 890, 985, 988, 1007, 1022 |
| BseYI | CCCAGC | 1 cut(s) | 1401 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| Bsh1236I | CGCG | 2 cut(s) | 160, 273 |
| BshFI | GGCC | 4 cut(s) | 137, 366, 498, 1400 |
| BshNI | GGYRCC | 2 cut(s) | 1477, 1552 |
| BshVI | ATCGAT | 1 cut(s) | 1541 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1450 |
| BslFI | GGGAC | 2 cut(s) | 665, 1327 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 449, 648, 766, 1103, 1442 |
| BsmAI | GTCTC | 3 cut(s) | 68, 708, 1129 |
| BsmFI | GGGAC | 2 cut(s) | 665, 1327 |
| BsmI | GAATGC | 2 cut(s) | 11, 541 |
| BsnI | GGCC | 4 cut(s) | 137, 366, 498, 1400 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1450 |
| Bsp1407I | TGTACA | 1 cut(s) | 930 |
| Bsp143I | GATC | 5 cut(s) | 468, 661, 745, 979, 1364 |
| Bsp68I | TCGCGA | 1 cut(s) | 273 |
| BspACI | CCGC | 3 cut(s) | 158, 443, 770 |
| BspANI | GGCC | 4 cut(s) | 137, 366, 498, 1400 |
| BspCNI | CTCAG | 3 cut(s) | 34, 1049, 1430 |
| BspDI | ATCGAT | 1 cut(s) | 1541 |
| BspFNI | CGCG | 2 cut(s) | 160, 273 |
| BspLI | GGNNCC | 4 cut(s) | 945, 1359, 1479, 1554 |
| BspMAI | CTGCAG | 4 cut(s) | 676, 880, 997, 1006 |
| BspMI | ACCTGC | 1 cut(s) | 931 |
| BspOI | GCTAGC | 1 cut(s) | 44 |
| BspPI | GGATC | 3 cut(s) | 753, 974, 1372 |
| BspQI | GCTCTTC | 2 cut(s) | 273, 726 |
| BspT107I | GGYRCC | 2 cut(s) | 1477, 1552 |
| BsrDI | GCAATG | 1 cut(s) | 1304 |
| BsrGI | TGTACA | 1 cut(s) | 930 |
| BsrI | ACTGG | 6 cut(s) | 795, 923, 1322, 1337, 1345, 1436 |
| BssMI | GATC | 5 cut(s) | 468, 661, 745, 979, 1364 |
| BssNI | GRCGYC | 1 cut(s) | 1553 |
| BssSI | CACGAG | 1 cut(s) | 360 |
| Bst2BI | CACGAG | 1 cut(s) | 360 |
| Bst2UI | CCWGG | 4 cut(s) | 139, 450, 1362, 1425 |
| Bst4CI | ACNGT | 6 cut(s) | 212, 548, 656, 777, 783, 1314 |
| Bst6I | CTCTTC | 3 cut(s) | 273, 375, 726 |
| BstACI | GRCGYC | 1 cut(s) | 1553 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1001 |
| BstAUI | TGTACA | 1 cut(s) | 930 |
| BstC8I | GCNNGC | 4 cut(s) | 42, 67, 639, 1356 |
| BstDEI | CTNAG | 4 cut(s) | 21, 647, 1036, 1417 |
| BstF5I | GGATG | 1 cut(s) | 511 |
| BstFNI | CGCG | 2 cut(s) | 160, 273 |
| BstH2I | RGCGCY | 1 cut(s) | 1556 |
| BstHHI | GCGC | 1 cut(s) | 1555 |
| BstKTI | GATC | 5 cut(s) | 471, 664, 748, 982, 1367 |
| BstMAI | GTCTC | 3 cut(s) | 68, 708, 1129 |
| BstMBI | GATC | 5 cut(s) | 468, 661, 745, 979, 1364 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 46, 1001, 1007, 1010, 1552 |
| BstNI | CCWGG | 4 cut(s) | 139, 450, 1362, 1425 |
| BstNSI | RCATGY | 1 cut(s) | 641 |
| BstSCI | CCNGG | 4 cut(s) | 137, 448, 1360, 1423 |
| BstSFI | CTRYAG | 4 cut(s) | 672, 876, 993, 1002 |
| BstUI | CGCG | 2 cut(s) | 160, 273 |
| BstV1I | GCAGC | 9 cut(s) | 323, 646, 837, 850, 890, 985, 988, 1007, 1022 |
| BstV2I | GAAGAC | 2 cut(s) | 516, 1101 |
| BstX2I | RGATCY | 1 cut(s) | 979 |
| BstYI | RGATCY | 1 cut(s) | 979 |
| Bsu15I | ATCGAT | 1 cut(s) | 1541 |
| BsuRI | GGCC | 4 cut(s) | 137, 366, 498, 1400 |
| BsuTUI | ATCGAT | 1 cut(s) | 1541 |
| BtgZI | GCGATG | 1 cut(s) | 288 |
| BtsCI | GGATG | 1 cut(s) | 511 |
| BtsI | GCAGTG | 3 cut(s) | 681, 906, 1011 |
| BtsIMutI | CAGTG | 6 cut(s) | 681, 906, 1011, 1344, 1425, 1443 |
| BtuMI | TCGCGA | 1 cut(s) | 273 |
| BveI | ACCTGC | 1 cut(s) | 931 |
| Cac8I | GCNNGC | 4 cut(s) | 42, 67, 639, 1356 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1001, 1424 |
| CfoI | GCGC | 1 cut(s) | 1555 |
| Cfr13I | GGNCC | 2 cut(s) | 135, 1399 |
| ClaI | ATCGAT | 1 cut(s) | 1541 |
| Csp6I | GTAC | 3 cut(s) | 254, 626, 931 |
| CviAII | CATG | 5 cut(s) | 103, 629, 638, 968, 1396 |
| CviQI | GTAC | 3 cut(s) | 254, 626, 931 |
| DdeI | CTNAG | 4 cut(s) | 21, 647, 1036, 1417 |
| DinI | GGCGCC | 1 cut(s) | 1554 |
| DpnI | GATC | 5 cut(s) | 470, 663, 747, 981, 1366 |
| DpnII | GATC | 5 cut(s) | 468, 661, 745, 979, 1364 |
| EaeI | YGGCCR | 2 cut(s) | 364, 496 |
| Eam1104I | CTCTTC | 3 cut(s) | 273, 375, 726 |
| EarI | CTCTTC | 3 cut(s) | 273, 375, 726 |
| Ecl136II | GAGCTC | 1 cut(s) | 1448 |
| Eco24I | GRGCYC | 1 cut(s) | 1450 |
| Eco53kI | GAGCTC | 1 cut(s) | 1448 |
| Eco57I | CTGAAG | 2 cut(s) | 707, 749 |
| EcoICRI | GAGCTC | 1 cut(s) | 1448 |
| EcoRI | GAATTC | 1 cut(s) | 734 |
| EcoRII | CCWGG | 4 cut(s) | 137, 448, 1360, 1423 |
| EcoT22I | ATGCAT | 1 cut(s) | 613 |
| EcoT38I | GRGCYC | 1 cut(s) | 1450 |
| EgeI | GGCGCC | 1 cut(s) | 1554 |
| EheI | GGCGCC | 1 cut(s) | 1554 |
| FaeI | CATG | 5 cut(s) | 106, 632, 641, 971, 1399 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 160, 192, 705, 737 |
| FaqI | GGGAC | 2 cut(s) | 665, 1327 |
| FatI | CATG | 5 cut(s) | 102, 628, 637, 967, 1395 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| FblI | GTMKAC | 1 cut(s) | 1244 |
| FokI | GGATG | 1 cut(s) | 518 |
| FriOI | GRGCYC | 1 cut(s) | 1450 |
| FspBI | CTAG | 2 cut(s) | 41, 1563 |
| GlaI | GCGC | 1 cut(s) | 1554 |
| GsaI | CCCAGC | 1 cut(s) | 1405 |
| GsuI | CTGGAG | 2 cut(s) | 906, 1214 |
| HaeII | RGCGCY | 1 cut(s) | 1556 |
| HaeIII | GGCC | 4 cut(s) | 137, 366, 498, 1400 |
| HhaI | GCGC | 1 cut(s) | 1555 |
| Hin1I | GRCGYC | 1 cut(s) | 1553 |
| Hin1II | CATG | 5 cut(s) | 106, 632, 641, 971, 1399 |
| Hin6I | GCGC | 1 cut(s) | 1553 |
| HinP1I | GCGC | 1 cut(s) | 1553 |
| HinfI | GANTC | 3 cut(s) | 680, 1183, 1223 |
| HphI | GGTGA | 4 cut(s) | 251, 590, 1127, 1158 |
| Hpy166II | GTNNAC | 3 cut(s) | 164, 933, 1245 |
| Hpy188I | TCNGA | 9 cut(s) | 24, 478, 711, 755, 787, 1078, 1129, 1222, 1513 |
| Hpy188III | TCNNGA | 7 cut(s) | 247, 260, 272, 520, 551, 687, 725 |
| Hpy8I | GTNNAC | 3 cut(s) | 164, 933, 1245 |
| HpyAV | CCTTC | 3 cut(s) | 244, 387, 1219 |
| HpyCH4III | ACNGT | 6 cut(s) | 212, 548, 656, 777, 783, 1314 |
| HpyCH4IV | ACGT | 1 cut(s) | 1031 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 46, 1001, 1007, 1010, 1552 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 647, 1036, 1417 |
| HpySE526I | ACGT | 1 cut(s) | 1031 |
| Hsp92I | GRCGYC | 1 cut(s) | 1553 |
| Hsp92II | CATG | 5 cut(s) | 106, 632, 641, 971, 1399 |
| HspAI | GCGC | 1 cut(s) | 1553 |
| KasI | GGCGCC | 1 cut(s) | 1552 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| Kzo9I | GATC | 5 cut(s) | 468, 661, 745, 979, 1364 |
| LguI | GCTCTTC | 2 cut(s) | 273, 726 |
| LmnI | GCTCC | 5 cut(s) | 62, 727, 925, 1363, 1445 |
| Lsp1109I | GCAGC | 9 cut(s) | 323, 646, 837, 850, 890, 985, 988, 1007, 1022 |
| LweI | GCATC | 7 cut(s) | 253, 598, 1034, 1035, 1082, 1208, 1533 |
| MaeI | CTAG | 2 cut(s) | 41, 1563 |
| MaeII | ACGT | 1 cut(s) | 1031 |
| MaeIII | GTNAC | 3 cut(s) | 777, 1164, 1314 |
| MalI | GATC | 5 cut(s) | 470, 663, 747, 981, 1366 |
| MboI | GATC | 5 cut(s) | 468, 661, 745, 979, 1364 |
| MboII | GAAGA | 9 cut(s) | 144, 260, 315, 350, 392, 521, 713, 989, 1101 |
| MfeI | CAATTG | 2 cut(s) | 1160, 1547 |
| MflI | RGATCY | 1 cut(s) | 979 |
| MhlI | GDGCHC | 1 cut(s) | 1450 |
| MlsI | TGGCCA | 2 cut(s) | 366, 498 |
| MluNI | TGGCCA | 2 cut(s) | 366, 498 |
| Mly113I | GGCGCC | 1 cut(s) | 1553 |
| MmeI | TCCRAC | 4 cut(s) | 280, 381, 723, 1121 |
| Mox20I | TGGCCA | 2 cut(s) | 366, 498 |
| Mph1103I | ATGCAT | 1 cut(s) | 613 |
| MscI | TGGCCA | 2 cut(s) | 366, 498 |
| MseI | TTAA | 3 cut(s) | 327, 815, 1140 |
| MslI | CAYNNNNRTG | 1 cut(s) | 88 |
| Msp20I | TGGCCA | 2 cut(s) | 366, 498 |
| MspA1I | CMGCKG | 2 cut(s) | 998, 1234 |
| MspR9I | CCNGG | 4 cut(s) | 139, 450, 1362, 1425 |
| MunI | CAATTG | 2 cut(s) | 1160, 1547 |
| Mva1269I | GAATGC | 2 cut(s) | 11, 541 |
| MvaI | CCWGG | 4 cut(s) | 139, 450, 1362, 1425 |
| MvnI | CGCG | 2 cut(s) | 160, 273 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 46, 1001, 1007, 1010, 1552 |
| NarI | GGCGCC | 1 cut(s) | 1553 |
| NdeII | GATC | 5 cut(s) | 468, 661, 745, 979, 1364 |
| NheI | GCTAGC | 1 cut(s) | 40 |
| NlaIII | CATG | 5 cut(s) | 106, 632, 641, 971, 1399 |
| NlaIV | GGNNCC | 4 cut(s) | 945, 1359, 1479, 1554 |
| NmuCI | GTSAC | 2 cut(s) | 777, 1164 |
| NruI | TCGCGA | 1 cut(s) | 273 |
| NsiI | ATGCAT | 1 cut(s) | 613 |
| NspI | RCATGY | 1 cut(s) | 641 |
| OliI | CACNNNNGTG | 1 cut(s) | 88 |
| PaeI | GCATGC | 1 cut(s) | 641 |
| PciSI | GCTCTTC | 2 cut(s) | 273, 726 |
| PctI | GAATGC | 2 cut(s) | 11, 541 |
| PfeI | GAWTC | 3 cut(s) | 680, 1183, 1223 |
| PfoI | TCCNGGA | 2 cut(s) | 448, 1360 |
| PluTI | GGCGCC | 1 cut(s) | 1556 |
| PshBI | ATTAAT | 1 cut(s) | 327 |
| Psp124BI | GAGCTC | 1 cut(s) | 1450 |
| Psp6I | CCWGG | 4 cut(s) | 137, 448, 1360, 1423 |
| PspFI | CCCAGC | 1 cut(s) | 1401 |
| PspGI | CCWGG | 4 cut(s) | 137, 448, 1360, 1423 |
| PspN4I | GGNNCC | 4 cut(s) | 945, 1359, 1479, 1554 |
| PspPI | GGNCC | 2 cut(s) | 135, 1399 |
| PstI | CTGCAG | 4 cut(s) | 676, 880, 997, 1006 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1001, 1424 |
| PsuI | RGATCY | 1 cut(s) | 979 |
| PvuII | CAGCTG | 2 cut(s) | 998, 1234 |
| RruI | TCGCGA | 1 cut(s) | 273 |
| RsaI | GTAC | 3 cut(s) | 255, 627, 932 |
| RsaNI | GTAC | 3 cut(s) | 254, 626, 931 |
| RseI | CAYNNNNRTG | 1 cut(s) | 88 |
| SacI | GAGCTC | 1 cut(s) | 1450 |
| SapI | GCTCTTC | 2 cut(s) | 273, 726 |
| SaqAI | TTAA | 3 cut(s) | 327, 815, 1140 |
| Sau3AI | GATC | 5 cut(s) | 468, 661, 745, 979, 1364 |
| Sau96I | GGNCC | 2 cut(s) | 135, 1399 |
| ScrFI | CCNGG | 4 cut(s) | 139, 450, 1362, 1425 |
| SduI | GDGCHC | 1 cut(s) | 1450 |
| SfaNI | GCATC | 7 cut(s) | 253, 598, 1034, 1035, 1082, 1208, 1533 |
| SfcI | CTRYAG | 4 cut(s) | 672, 876, 993, 1002 |
| SfoI | GGCGCC | 1 cut(s) | 1554 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 88 |
| SmlI | CTYRAG | 3 cut(s) | 520, 551, 1449 |
| SmoI | CTYRAG | 3 cut(s) | 520, 551, 1449 |
| SphI | GCATGC | 1 cut(s) | 641 |
| SsiI | CCGC | 3 cut(s) | 158, 443, 770 |
| SspDI | GGCGCC | 1 cut(s) | 1552 |
| SspMI | CTAG | 2 cut(s) | 41, 1563 |
| SstI | GAGCTC | 1 cut(s) | 1450 |
| StyD4I | CCNGG | 4 cut(s) | 137, 448, 1360, 1423 |
| TaaI | ACNGT | 6 cut(s) | 212, 548, 656, 777, 783, 1314 |
| TaiI | ACGT | 1 cut(s) | 1034 |
| TaqI | TCGA | 2 cut(s) | 1146, 1541 |
| TatI | WGTACW | 1 cut(s) | 930 |
| TauI | GCSGC | 1 cut(s) | 773 |
| TfiI | GAWTC | 3 cut(s) | 680, 1183, 1223 |
| Tru1I | TTAA | 3 cut(s) | 327, 815, 1140 |
| Tru9I | TTAA | 3 cut(s) | 327, 815, 1140 |
| TscAI | CASTG | 6 cut(s) | 681, 906, 1011, 1344, 1425, 1443 |
| TseFI | GTSAC | 2 cut(s) | 777, 1164 |
| TseI | GCWGC | 9 cut(s) | 311, 634, 825, 838, 878, 995, 998, 1001, 1010 |
| Tsp45I | GTSAC | 2 cut(s) | 777, 1164 |
| TspDTI | ATGAA | 5 cut(s) | 119, 137, 309, 447, 522 |
| TspRI | CASTG | 6 cut(s) | 681, 906, 1011, 1344, 1425, 1443 |
| VspI | ATTAAT | 1 cut(s) | 327 |
| XapI | RAATTY | 3 cut(s) | 369, 734, 1520 |
| XceI | RCATGY | 1 cut(s) | 641 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 491 |
| XmiI | GTMKAC | 1 cut(s) | 1244 |
| XspI | CTAG | 2 cut(s) | 41, 1563 |
| Zsp2I | ATGCAT | 1 cut(s) | 613 |