Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010397

Physical Location & Seq

Genomic Coordinates Reverse (-)

71218447 .. 71219763

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0590000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTTATAAAACTATACAAAGGGCCCCAAATTGATCAGGGCCCCAAAGTGCCACCGGAGATCAAAACAGAGGTGATAGCATGGATAAAGAGAAAAGATTCTATTAAGCAAGAAAAGGCAGCTGTTCAATATGATATTAGAGAAGAACTCCGCAATGATTATCTTGGCAATCAAACAAGTCTGTACAATGACGATGACGACAATGATGATGATGATGATGGATTTCAGTATCCACCAGACATGCACCCTGCAGAACGACAAGATTATCGTGCTGCAATAAGACGATCAACCGTAGATCGTGATAAGAACTCTCAGTTTAGTAGAAGTGCAAGATTTCAATTTCCAAAACAATCGAGAGGCGGTAGTAGCAGTCAACAACCGCAACATGTTGATCGATCAAAAACCTATCGGTACTCATTTCCTGAGCCTCCAGTAGCAATGCCATCAAAATATAGTCGATCAAAACAAAGCACAATTAAATCATTACTAAAAGGTGGTAGAGAACTATTGGCAACAATGGTGTCCAAATACCACATATATGATACTGTCCCTTTTAACAAAGCTAATTCTCCACACACTACTACAAAATCGAAAATAGACAACGTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

203

Amino Acids

23.44

Weight (kDa)

9.3

Isoelectric Point (pI)

64.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26990 AT3G26990
fragaria_vesca	FvH4_6g53890 FvH4_6g53890
malus_domestica	MD09G1007500.v1.1 MD17G1011400.v1.1
prunus_persica	Prupe.3G309500_v2.0.a1 Prupe.3G309500_v2.0.a1 Prupe.3G309500_v2.0.a1
pyrus_communis	pycom111g00580 pycom17g00610
rosa_chinensis	RchiOBHm_Chr2g0176051
rosa_laevigata	RLG00000022376
rosa_multiflora	Rmu_sc0033063.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076820
rosa_rugosa	Rorug02G0590000
rosa_samantha	Rh2AG668800 Rh2BG680400 Rh2CG643300 Rh2DG694100
rosa_wichuraiana	Rw2G054850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AciI	CCGC	3 cut(s)	151, 360, 380
AclI	AACGTT	1 cut(s)	603
AfaI	GTAC	2 cut(s)	185, 413
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	128, 338
AluBI	AGCT	2 cut(s)	122, 563
AluI	AGCT	2 cut(s)	122, 563
AoxI	GGCC	2 cut(s)	23, 40
ApaI	GGGCCC	2 cut(s)	27, 44
ApeKI	GCWGC	2 cut(s)	119, 272
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	4 cut(s)	23, 24, 40, 41
AsuHPI	GGTGA	1 cut(s)	85
BaeGI	GKGCMC	2 cut(s)	27, 44
BanII	GRGCYC	2 cut(s)	27, 44
BbvI	GCAGC	2 cut(s)	131, 259
BccI	CCATC	2 cut(s)	212, 451
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	1 cut(s)	34
BfaI	CTAG	1 cut(s)	610
BfmI	CTRYAG	1 cut(s)	249
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	120, 273
BlsI	GCNGC	2 cut(s)	121, 274
BmgT120I	GGNCC	4 cut(s)	23, 24, 40, 41
BmiI	GGNNCC	4 cut(s)	25, 26, 42, 43
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	423
Bsa29I	ATCGAT	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	160, 444
BseCI	ATCGAT	1 cut(s)	394
BseMI	GCAATG	2 cut(s)	160, 444
BseMII	CTCAG	2 cut(s)	326, 414
BseNI	ACTGG	1 cut(s)	431
BseSI	GKGCMC	2 cut(s)	27, 44
BseXI	GCAGC	2 cut(s)	131, 259
BshFI	GGCC	2 cut(s)	25, 42
BshVI	ATCGAT	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	25, 42
Bsp120I	GGGCCC	2 cut(s)	23, 40
Bsp1286I	GDGCHC	2 cut(s)	27, 44
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	7 cut(s)	34, 60, 284, 295, 391, 395, 458
BspACI	CCGC	3 cut(s)	151, 360, 380
BspANI	GGCC	2 cut(s)	25, 42
BspCNI	CTCAG	2 cut(s)	325, 415
BspDI	ATCGAT	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	25, 26, 42, 43
BspMAI	CTGCAG	1 cut(s)	253
BsrDI	GCAATG	2 cut(s)	160, 444
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	431
BssMI	GATC	7 cut(s)	34, 60, 284, 295, 391, 395, 458
Bst4CI	ACNGT	2 cut(s)	292, 547
BstAUI	TGTACA	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	312, 423
BstKTI	GATC	7 cut(s)	37, 63, 287, 298, 394, 398, 461
BstMBI	GATC	7 cut(s)	34, 60, 284, 295, 391, 395, 458
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNSI	RCATGY	2 cut(s)	244, 389
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	2 cut(s)	27, 44
BstV1I	GCAGC	2 cut(s)	131, 259
Bsu15I	ATCGAT	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	25, 42
BsuTUI	ATCGAT	1 cut(s)	394
Cfr13I	GGNCC	4 cut(s)	23, 24, 40, 41
ClaI	ATCGAT	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	184, 412
CviAII	CATG	3 cut(s)	81, 241, 386
CviJI	RGCY	5 cut(s)	25, 42, 122, 427, 563
CviKI_1	RGCY	5 cut(s)	25, 42, 122, 427, 563
CviQI	GTAC	2 cut(s)	184, 412
DdeI	CTNAG	2 cut(s)	312, 423
DpnI	GATC	7 cut(s)	36, 62, 286, 297, 393, 397, 460
DpnII	GATC	7 cut(s)	34, 60, 284, 295, 391, 395, 458
Eco24I	GRGCYC	2 cut(s)	27, 44
EcoO109I	RGGNCCY	4 cut(s)	23, 24, 40, 41
EcoT38I	GRGCYC	2 cut(s)	27, 44
FaeI	CATG	3 cut(s)	84, 244, 389
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	3 cut(s)	80, 240, 385
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	120, 273
FriOI	GRGCYC	2 cut(s)	27, 44
Fsp4HI	GCNGC	2 cut(s)	120, 273
FspBI	CTAG	1 cut(s)	610
GluI	GCNGC	2 cut(s)	120, 273
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	25, 42
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	3 cut(s)	84, 244, 389
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188III	TCNNGA	3 cut(s)	299, 354, 422
Hpy8I	GTNNAC	1 cut(s)	374
HpyCH4III	ACNGT	2 cut(s)	292, 547
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	4 cut(s)	244, 251, 275, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	312, 423
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	3 cut(s)	84, 244, 389
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	7 cut(s)	34, 60, 284, 295, 391, 395, 458
LpnPI	CCDG	6 cut(s)	23, 69, 249, 261, 435, 444
Lsp1109I	GCAGC	2 cut(s)	131, 259
MaeI	CTAG	1 cut(s)	610
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	7 cut(s)	36, 62, 286, 297, 393, 397, 460
MboI	GATC	7 cut(s)	34, 60, 284, 295, 391, 395, 458
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	27, 44
MluCI	AATT	4 cut(s)	30, 338, 474, 565
MnlI	CCTC	3 cut(s)	64, 350, 438
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	3 cut(s)	105, 477, 555
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeII	GATC	7 cut(s)	34, 60, 284, 295, 391, 395, 458
NlaIII	CATG	3 cut(s)	84, 244, 389
NlaIV	GGNNCC	4 cut(s)	25, 26, 42, 43
NspI	RCATGY	2 cut(s)	244, 389
PciI	ACATGT	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	121, 274
PscI	ACATGT	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	25, 26, 42, 43
PspOMI	GGGCCC	2 cut(s)	23, 40
PspPI	GGNCC	4 cut(s)	23, 24, 40, 41
PstI	CTGCAG	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	185, 413
RsaNI	GTAC	2 cut(s)	184, 412
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	105, 477, 555
SatI	GCNGC	2 cut(s)	120, 273
Sau3AI	GATC	7 cut(s)	34, 60, 284, 295, 391, 395, 458
Sau96I	GGNCC	4 cut(s)	23, 24, 40, 41
SduI	GDGCHC	2 cut(s)	27, 44
SetI	ASST	7 cut(s)	75, 124, 407, 496, 565, 606, 611
SfcI	CTRYAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	4 cut(s)	30, 338, 474, 565
SsiI	CCGC	3 cut(s)	151, 360, 380
SspMI	CTAG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	292, 547
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	4 cut(s)	353, 394, 457, 590
TasI	AATT	4 cut(s)	30, 338, 474, 565
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	3 cut(s)	105, 477, 555
Tru9I	TTAA	3 cut(s)	105, 477, 555
TseI	GCWGC	2 cut(s)	119, 272
XceI	RCATGY	2 cut(s)	244, 389
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.