RLG00000022754

One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018721
Physical Location & Seq
Forward (+)
11641917 .. 11642857
941 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022754

Sequence Viewer

Length: 729 bp
ATGTCTCCCATGTGGCGTCCTCCATTGAATGAGCCAATTTGTAATAGCACATCCTCCTTTGTGTGTTACTGCCATATCAAGTACTCGTTTTGGCTGCTCAAGATCAGCCTCATGAAAACCTTATATTTCATGAGGAGGTTCTACCCCATGGAAAGGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCTGTAAACTACTAGGGGCCCATGTCGCCCATGCCAGATTAATTGTGTTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTTATTTCGTACCAGAGAAGCCTATGTATGAGCAAGGATTAATTTTACTTCCCCACCTAGCTACTCTATGTTGGGGGGAAGGCATAGGTGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGTGTATATGATACTTGGGCTCTGGGTGGAGGAGATGTAAGAAAAATTACCAACCTAACCCTTAGCCCAAGTATTGTATTTGGTTATTTACTAAAATCCCCTTTCGGTGGAGAAGGGTGGACCGTTAGTGTGGACGATTTGGAAGATATAATTGGAGGGCATTGTGTGGTTAGGTTCCATTTGCATACTTGGTGGAATCTGTCATATCTTAACCAAACCTTTTGCATCGTCGTGCACTTGTATGGTCTGGAGATGCTTACATGTCTTATAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PSII

Protein Analysis

243

Amino Acids

27.5

Weight (kDa)

7.61

Isoelectric Point (pI)

26.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSII PF00421 68 - 141 1.2e-27 Photosystem II protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018721)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00280
rosa_laevigata RLG00000022754
rosa_multiflora Rmu_sc0006153.1_g000042
rosa_roxburghii Rroxscaffold_7G00181930
rosa_rugosa RorugMtG0000600
rosa_samantha Rh1BG017200 Rh5AG281200 Rh7DG262700
rosa_wichuraiana Rw0G001310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 16
AfaI GTAC 2 cut(s) 83, 339
AfiI CCNNNNNNNGG 2 cut(s) 153, 560
AflIII ACRYGT 1 cut(s) 713
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 3 cut(s) 28, 323, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 3 cut(s) 176, 182, 389
AluI AGCT 3 cut(s) 176, 182, 389
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 686
AoxI GGCC 3 cut(s) 219, 264, 300
ApaI GGGCCC 1 cut(s) 268
ApaLI GTGCAC 1 cut(s) 686
ApeKI GCWGC 1 cut(s) 94
AseI ATTAAT 2 cut(s) 287, 368
AsiGI ACCGGT 1 cut(s) 203
AspS9I GGNCC 5 cut(s) 219, 264, 265, 300, 573
AsuC2I CCSGG 1 cut(s) 223
AvaII GGWCC 1 cut(s) 573
BaeGI GKGCMC 2 cut(s) 268, 690
BanII GRGCYC 2 cut(s) 268, 475
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 1 cut(s) 81
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 260, 386, 428
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 5 cut(s) 219, 264, 265, 300, 573
BmiI GGNNCC 3 cut(s) 265, 266, 629
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 687, 696
BpmI CTGGAG 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 560
Bse118I RCCGGY 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 153, 560
BseMI GCAATG 1 cut(s) 315
BseRI GAGGAG 2 cut(s) 148, 498
BseSI GKGCMC 2 cut(s) 268, 690
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 3 cut(s) 221, 266, 302
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 690
BsiSI CCGG 3 cut(s) 204, 222, 303
BslI CCNNNNNNNGG 2 cut(s) 153, 560
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 3 cut(s) 221, 266, 302
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 268, 475, 690
Bsp143I GATC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 3 cut(s) 221, 266, 302
BspHI TCATGA 2 cut(s) 111, 129
BspLI GGNNCC 3 cut(s) 265, 266, 629
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 102
BssNI GRCGYC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 577
BstACI GRCGYC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 515
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 218, 227, 272
BstNSI RCATGY 1 cut(s) 717
BstSCI CCNGG 1 cut(s) 221
BstSLI GKGCMC 2 cut(s) 268, 690
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 3 cut(s) 221, 266, 302
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 50
CciI TCATGA 2 cut(s) 111, 129
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 5 cut(s) 219, 264, 265, 300, 573
CseI GACGC 1 cut(s) 5
Csp6I GTAC 2 cut(s) 82, 338
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 7 cut(s) 10, 112, 130, 148, 269, 278, 714
CviQI GTAC 2 cut(s) 82, 338
DdeI CTNAG 1 cut(s) 515
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 2 cut(s) 268, 475
Eco47I GGWCC 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 2 cut(s) 268, 475
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 7 cut(s) 13, 115, 133, 151, 272, 281, 717
FatI CATG 7 cut(s) 9, 111, 129, 147, 268, 277, 713
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 2 cut(s) 268, 475
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 3 cut(s) 260, 386, 428
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 722
HaeIII GGCC 3 cut(s) 221, 266, 302
HapII CCGG 3 cut(s) 204, 222, 303
HgaI GACGC 1 cut(s) 5
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 7 cut(s) 13, 115, 133, 151, 272, 281, 717
HinfI GANTC 1 cut(s) 649
HpaII CCGG 3 cut(s) 204, 222, 303
Hpy166II GTNNAC 4 cut(s) 254, 573, 586, 688
Hpy188III TCNNGA 5 cut(s) 100, 112, 130, 188, 701
Hpy8I GTNNAC 4 cut(s) 254, 573, 586, 688
Hpy99I CGWCG 1 cut(s) 686
HpyAV CCTTC 2 cut(s) 401, 560
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4V TGCA 3 cut(s) 637, 678, 688
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 227, 272
HpyF3I CTNAG 1 cut(s) 515
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 7 cut(s) 13, 115, 133, 151, 272, 281, 717
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 2 cut(s) 687, 696
MaeI CTAG 3 cut(s) 260, 386, 428
MaeIII GTNAC 2 cut(s) 65, 188
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 2 cut(s) 416, 608
MhlI GDGCHC 3 cut(s) 268, 475, 690
MluCI AATT 6 cut(s) 36, 241, 288, 369, 498, 603
MnlI CCTC 7 cut(s) 30, 64, 119, 126, 129, 476, 602
MseI TTAA 4 cut(s) 162, 287, 368, 663
MslI CAYNNNNRTG 2 cut(s) 683, 693
MspI CCGG 3 cut(s) 204, 222, 303
MspR9I CCNGG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 218, 227, 272
NciI CCSGG 1 cut(s) 223
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 102
NlaIII CATG 7 cut(s) 13, 115, 133, 151, 272, 281, 717
NlaIV GGNNCC 3 cut(s) 265, 266, 629
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 717
PagI TCATGA 2 cut(s) 111, 129
PciI ACATGT 1 cut(s) 713
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 649
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 96
PscI ACATGT 1 cut(s) 713
PshBI ATTAAT 2 cut(s) 287, 368
PspN4I GGNNCC 3 cut(s) 265, 266, 629
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 5 cut(s) 219, 264, 265, 300, 573
RsaI GTAC 2 cut(s) 83, 339
RsaNI GTAC 2 cut(s) 82, 338
RseI CAYNNNNRTG 2 cut(s) 683, 693
SaqAI TTAA 4 cut(s) 162, 287, 368, 663
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 5 cut(s) 219, 264, 265, 300, 573
ScaI AGTACT 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 3 cut(s) 268, 475, 690
SfaNI GCATC 2 cut(s) 687, 696
SinI GGWCC 1 cut(s) 573
SmiMI CAYNNNNRTG 2 cut(s) 683, 693
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 6 cut(s) 36, 241, 288, 369, 498, 603
SspMI CTAG 3 cut(s) 260, 386, 428
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 577
TasI AATT 6 cut(s) 36, 241, 288, 369, 498, 603
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 1 cut(s) 649
Tru1I TTAA 4 cut(s) 162, 287, 368, 663
Tru9I TTAA 4 cut(s) 162, 287, 368, 663
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 118, 128, 326
VneI GTGCAC 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 573
VspI ATTAAT 2 cut(s) 287, 368
XceI RCATGY 1 cut(s) 717
XspI CTAG 3 cut(s) 260, 386, 428
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.