Rmu_sc0006153.1_g000042

One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006153.1
OG0018721
Physical Location & Seq
Reverse (-)
158528 .. 160500
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006153.1_g000042.1.cds

Sequence Viewer

Length: 759 bp
atgggagttgcgagggtgttggacactgctctgttatacgctattcatggttctactgtagaaaatactttatttgaagatggtgatggtgcaaatacattccgtgcttttaacccaactcaagctgaagaaacttattccatggtcaccgctaaccgctttgggtcccaaatctttgggctcaagatcagcctcatgaaaaccttatattccttgaggaggttctaccccgtggaaatgctctttaatggaactttagctttagctggtcgtgaccaagaaaccaccggtttcgcttggtgggccgagaatgcccgacttatcaatttatctggtaaactactgggggtccatgtcgcccatgctggattaattgtattctgggccggagcaatgaacctatttgaaatggctcatttagtaccagagaagcctatgtatgaacaaggattaattttacttccccacctagctactctaggttgggaggtaggtccaggtggggaagttctagacacctttccttactttgtgtctggagtacttcacttaatttcctctgcagtattgggctttggcggtatttatcatgcacttctgggacccgagactcttgaagaatcttttccatttttcggattcttcctattcgtaggtcatttatggcatgcaagaagggctcgtgcagctgctgcgggatttgaaaaaggaattgatcatgattttgaacttgttctttccatgactcctcttaactga

Protein Analysis

252

Amino Acids

27.74

Weight (kDa)

5.52

Isoelectric Point (pI)

26.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018721)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00280
rosa_laevigata RLG00000022754
rosa_multiflora Rmu_sc0006153.1_g000042
rosa_roxburghii Rroxscaffold_7G00181930
rosa_rugosa RorugMtG0000600
rosa_samantha Rh1BG017200 Rh5AG281200 Rh7DG262700
rosa_wichuraiana Rw0G001310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 150, 157, 579, 695
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 2 cut(s) 423, 543
AfiI CCNNNNNNNGG 2 cut(s) 219, 635
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 5 cut(s) 77, 407, 617, 704, 728
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 5 cut(s) 125, 260, 266, 473, 689
AluI AGCT 5 cut(s) 125, 260, 266, 473, 689
Alw26I GTCTC 1 cut(s) 602
AlwNI CAGNNNCTG 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 2 cut(s) 303, 384
ApeKI GCWGC 3 cut(s) 686, 689, 692
AseI ATTAAT 2 cut(s) 371, 452
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 2 cut(s) 624, 732
AspS9I GGNCC 6 cut(s) 165, 303, 349, 384, 494, 602
AsuHPI GGTGA 2 cut(s) 95, 139
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 4 cut(s) 165, 349, 494, 602
BanII GRGCYC 2 cut(s) 183, 682
BauI CACGAG 1 cut(s) 681
BbvI GCAGC 3 cut(s) 676, 679, 698
BccI CCATC 2 cut(s) 74, 80
BciT130I CCWGG 1 cut(s) 498
BclI TGATCA 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 3 cut(s) 470, 479, 512
BfmI CTRYAG 2 cut(s) 57, 561
BisI GCNGC 3 cut(s) 687, 690, 693
BlsI GCNGC 3 cut(s) 688, 691, 694
BmcAI AGTACT 1 cut(s) 543
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 4 cut(s) 165, 349, 494, 602
BmeT110I CYCGRG 1 cut(s) 605
BmgT120I GGNCC 6 cut(s) 165, 303, 349, 384, 494, 602
BmiI GGNNCC 5 cut(s) 166, 167, 350, 603, 604
BmrFI CCNGG 1 cut(s) 498
BmrI ACTGGG 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 558
BpuEI CTTGAG 3 cut(s) 105, 167, 235
BsaJI CCNNGG 2 cut(s) 141, 231
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 635
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 141, 231
BseLI CCNNNNNNNGG 2 cut(s) 219, 635
BseMI GCAATG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 232, 738
BseXI GCAGC 3 cut(s) 676, 679, 698
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 2 cut(s) 305, 386
BshTI ACCGGT 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 2 cut(s) 288, 387
BslFI GGGAC 2 cut(s) 151, 615
BslI CCNNNNNNNGG 2 cut(s) 219, 635
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 2 cut(s) 151, 615
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 2 cut(s) 305, 386
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 183, 682
Bsp143I GATC 2 cut(s) 186, 715
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 4 cut(s) 150, 157, 579, 695
BspANI GGCC 2 cut(s) 305, 386
BspHI TCATGA 2 cut(s) 195, 718
BspLI GGNNCC 5 cut(s) 166, 167, 350, 603, 604
BspMAI CTGCAG 1 cut(s) 565
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 1 cut(s) 348
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 141, 231
BssMI GATC 2 cut(s) 186, 715
BssSI CACGAG 1 cut(s) 681
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 669
BstDSI CCRYGG 2 cut(s) 141, 231
BstEII GGTNACC 1 cut(s) 145
BstENI CCTNNNNNAGG 1 cut(s) 217
BstKTI GATC 2 cut(s) 189, 718
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 2 cut(s) 186, 715
BstMWI GCNNNNNNNGC 5 cut(s) 302, 311, 677, 686, 692
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 671
BstPI GGTNACC 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 496
BstSFI CTRYAG 2 cut(s) 57, 561
BstV1I GCAGC 3 cut(s) 676, 679, 698
BstXI CCANNNNNNTGG 1 cut(s) 176
BsuRI GGCC 2 cut(s) 305, 386
BtgI CCRYGG 2 cut(s) 141, 231
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 669
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 2 cut(s) 195, 718
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 6 cut(s) 165, 303, 349, 384, 494, 602
Csp6I GTAC 2 cut(s) 422, 542
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 9 cut(s) 47, 142, 196, 353, 362, 590, 668, 719, 742
CviQI GTAC 2 cut(s) 422, 542
DpnI GATC 2 cut(s) 188, 717
DpnII GATC 2 cut(s) 186, 715
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 183, 682
Eco47I GGWCC 4 cut(s) 165, 349, 494, 602
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 605
Eco91I GGTNACC 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 217
EcoO109I RGGNCCY 2 cut(s) 165, 602
EcoO65I GGTNACC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 183, 682
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 9 cut(s) 50, 145, 199, 356, 365, 593, 671, 722, 745
FaqI GGGAC 2 cut(s) 151, 615
FatI CATG 9 cut(s) 46, 141, 195, 352, 361, 589, 667, 718, 741
FauI CCCGC 1 cut(s) 688
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 3 cut(s) 687, 690, 693
FriOI GRGCYC 2 cut(s) 183, 682
Fsp4HI GCNGC 3 cut(s) 687, 690, 693
FspBI CTAG 3 cut(s) 470, 479, 512
GluI GCNGC 3 cut(s) 687, 690, 693
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 2 cut(s) 305, 386
HapII CCGG 2 cut(s) 288, 387
Hin1II CATG 9 cut(s) 50, 145, 199, 356, 365, 593, 671, 722, 745
HinfI GANTC 4 cut(s) 610, 620, 639, 745
HpaII CCGG 2 cut(s) 288, 387
HphI GGTGA 2 cut(s) 95, 139
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 638
Hpy188III TCNNGA 7 cut(s) 184, 196, 272, 512, 537, 614, 719
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 669
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 5 cut(s) 92, 563, 593, 671, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 311, 677, 686, 692
Hsp92II CATG 9 cut(s) 50, 145, 199, 356, 365, 593, 671, 722, 745
KflI GGGWCCC 2 cut(s) 165, 602
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 2 cut(s) 186, 715
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 3 cut(s) 676, 679, 698
MaeI CTAG 3 cut(s) 470, 479, 512
MaeIII GTNAC 2 cut(s) 145, 272
MalI GATC 2 cut(s) 188, 717
MboI GATC 2 cut(s) 186, 715
MboII GAAGA 4 cut(s) 89, 140, 629, 634
MhlI GDGCHC 2 cut(s) 183, 682
MluCI AATT 5 cut(s) 325, 372, 453, 552, 711
MlyI GAGTC 2 cut(s) 604, 739
MnlI CCTC 7 cut(s) 6, 203, 210, 213, 481, 568, 759
MroXI GAANNNNTTC 2 cut(s) 624, 732
MseI TTAA 6 cut(s) 111, 246, 371, 452, 551, 753
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 2 cut(s) 288, 387
MspR9I CCNGG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 5 cut(s) 302, 311, 677, 686, 692
NcoI CCATGG 1 cut(s) 141
NdeII GATC 2 cut(s) 186, 715
NlaIII CATG 9 cut(s) 50, 145, 199, 356, 365, 593, 671, 722, 745
NlaIV GGNNCC 5 cut(s) 166, 167, 350, 603, 604
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 2 cut(s) 145, 272
NspI RCATGY 1 cut(s) 671
PaeI GCATGC 1 cut(s) 671
PagI TCATGA 2 cut(s) 195, 718
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 624, 732
PfeI GAWTC 2 cut(s) 620, 639
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 3 cut(s) 688, 691, 694
PleI GAGTC 2 cut(s) 604, 739
PpsI GAGTC 2 cut(s) 604, 739
PpuMI RGGWCCY 2 cut(s) 165, 602
PshBI ATTAAT 2 cut(s) 371, 452
Psp5II RGGWCCY 2 cut(s) 165, 602
Psp6I CCWGG 1 cut(s) 496
PspEI GGTNACC 1 cut(s) 145
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 5 cut(s) 166, 167, 350, 603, 604
PspPI GGNCC 6 cut(s) 165, 303, 349, 384, 494, 602
PspPPI RGGWCCY 2 cut(s) 165, 602
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 692
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 2 cut(s) 423, 543
RsaNI GTAC 2 cut(s) 422, 542
SaqAI TTAA 6 cut(s) 111, 246, 371, 452, 551, 753
SatI GCNGC 3 cut(s) 687, 690, 693
Sau3AI GATC 2 cut(s) 186, 715
Sau96I GGNCC 6 cut(s) 165, 303, 349, 384, 494, 602
ScaI AGTACT 1 cut(s) 543
SchI GAGTC 2 cut(s) 604, 739
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 2 cut(s) 183, 682
SfcI CTRYAG 2 cut(s) 57, 561
SinI GGWCC 4 cut(s) 165, 349, 494, 602
SmlI CTYRAG 3 cut(s) 120, 182, 214
SmoI CTYRAG 3 cut(s) 120, 182, 214
SphI GCATGC 1 cut(s) 671
Sse9I AATT 5 cut(s) 325, 372, 453, 552, 711
SsiI CCGC 4 cut(s) 150, 157, 579, 695
SspMI CTAG 3 cut(s) 470, 479, 512
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 58
TasI AATT 5 cut(s) 325, 372, 453, 552, 711
TatI WGTACW 1 cut(s) 541
TfiI GAWTC 2 cut(s) 620, 639
Tru1I TTAA 6 cut(s) 111, 246, 371, 452, 551, 753
Tru9I TTAA 6 cut(s) 111, 246, 371, 452, 551, 753
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 145, 272
TseI GCWGC 3 cut(s) 686, 689, 692
Tsp45I GTSAC 2 cut(s) 145, 272
TspDTI ATGAA 4 cut(s) 35, 212, 410, 456
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 4 cut(s) 165, 349, 494, 602
VspI ATTAAT 2 cut(s) 371, 452
XagI CCTNNNNNAGG 1 cut(s) 217
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 1 cut(s) 671
XmnI GAANNNNTTC 2 cut(s) 624, 732
XspI CTAG 3 cut(s) 470, 479, 512
ZrmI AGTACT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.