One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00280 |
| rosa_laevigata | RLG00000022754 |
| rosa_multiflora | Rmu_sc0006153.1_g000042 |
| rosa_roxburghii | Rroxscaffold_7G00181930 |
| rosa_rugosa | RorugMtG0000600 |
| rosa_samantha | Rh1BG017200 Rh5AG281200 Rh7DG262700 |
| rosa_wichuraiana | Rw0G001310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 227 |
| Acc36I | ACCTGC | 1 cut(s) | 227 |
| AccBSI | CCGCTC | 1 cut(s) | 616 |
| AciI | CCGC | 7 cut(s) | 87, 138, 153, 165, 208, 616, 626 |
| AclI | AACGTT | 2 cut(s) | 105, 306 |
| AclWI | GGATC | 1 cut(s) | 442 |
| AcoI | YGGCCR | 3 cut(s) | 3, 88, 189 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 557 |
| AgeI | ACCGGT | 1 cut(s) | 452 |
| AgsI | TTSAA | 1 cut(s) | 316 |
| AjnI | CCWGG | 1 cut(s) | 539 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 14, 46 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 291, 323 |
| AluBI | AGCT | 6 cut(s) | 9, 25, 238, 278, 374, 383 |
| AluI | AGCT | 6 cut(s) | 9, 25, 238, 278, 374, 383 |
| Alw26I | GTCTC | 2 cut(s) | 402, 655 |
| AlwI | GGATC | 1 cut(s) | 442 |
| AoxI | GGCC | 4 cut(s) | 3, 88, 189, 356 |
| ApaI | GGGCCC | 1 cut(s) | 360 |
| ApeKI | GCWGC | 3 cut(s) | 159, 162, 275 |
| AsiGI | ACCGGT | 1 cut(s) | 452 |
| AspLEI | GCGC | 3 cut(s) | 143, 341, 477 |
| AspS9I | GGNCC | 5 cut(s) | 356, 357, 365, 446, 560 |
| AsuC2I | CCSGG | 2 cut(s) | 288, 487 |
| AsuHPI | GGTGA | 2 cut(s) | 102, 109 |
| AvaII | GGWCC | 3 cut(s) | 365, 446, 560 |
| BaeGI | GKGCMC | 1 cut(s) | 360 |
| BalI | TGGCCA | 2 cut(s) | 5, 191 |
| BanII | GRGCYC | 1 cut(s) | 360 |
| BbvI | GCAGC | 3 cut(s) | 146, 174, 287 |
| BccI | CCATC | 1 cut(s) | 86 |
| BciT130I | CCWGG | 1 cut(s) | 541 |
| BciVI | GTATCC | 1 cut(s) | 647 |
| BcnI | CCSGG | 2 cut(s) | 288, 487 |
| BcoDI | GTCTC | 2 cut(s) | 402, 655 |
| BfaI | CTAG | 2 cut(s) | 68, 119 |
| BfmI | CTRYAG | 2 cut(s) | 160, 665 |
| BfoI | RGCGCY | 1 cut(s) | 144 |
| BfuAI | ACCTGC | 1 cut(s) | 227 |
| BfuI | GTATCC | 1 cut(s) | 647 |
| BisI | GCNGC | 7 cut(s) | 88, 139, 153, 160, 163, 276, 617 |
| BlsI | GCNGC | 7 cut(s) | 89, 140, 154, 161, 164, 277, 618 |
| Bme1390I | CCNGG | 3 cut(s) | 288, 487, 541 |
| Bme18I | GGWCC | 3 cut(s) | 365, 446, 560 |
| BmgT120I | GGNCC | 5 cut(s) | 356, 357, 365, 446, 560 |
| BmiI | GGNNCC | 3 cut(s) | 358, 367, 561 |
| BmrFI | CCNGG | 3 cut(s) | 288, 487, 541 |
| BoxI | GACNNNNGTC | 1 cut(s) | 414 |
| BpuEI | CTTGAG | 4 cut(s) | 363, 369, 426, 598 |
| BpuMI | CCSGG | 2 cut(s) | 288, 487 |
| BsaAI | YACGTR | 1 cut(s) | 127 |
| BsaI | GGTCTC | 1 cut(s) | 402 |
| BsaJI | CCNNGG | 4 cut(s) | 186, 486, 539, 605 |
| BsaWI | WCCGGW | 1 cut(s) | 452 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 291, 321, 628, 658 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 557 |
| Bse118I | RCCGGY | 1 cut(s) | 452 |
| Bse1I | ACTGG | 1 cut(s) | 367 |
| BseBI | CCWGG | 1 cut(s) | 541 |
| BseDI | CCNNGG | 4 cut(s) | 186, 486, 539, 605 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 557 |
| BseMII | CTCAG | 1 cut(s) | 336 |
| BseNI | ACTGG | 1 cut(s) | 367 |
| BseRI | GAGGAG | 1 cut(s) | 519 |
| BseSI | GKGCMC | 1 cut(s) | 360 |
| BseXI | GCAGC | 3 cut(s) | 146, 174, 287 |
| Bsh1285I | CGRYCG | 1 cut(s) | 486 |
| BshFI | GGCC | 4 cut(s) | 5, 90, 191, 358 |
| BshTI | ACCGGT | 1 cut(s) | 452 |
| BsiEI | CGRYCG | 1 cut(s) | 486 |
| BsiSI | CCGG | 3 cut(s) | 288, 453, 486 |
| BslFI | GGGAC | 1 cut(s) | 131 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 557 |
| BsmAI | GTCTC | 2 cut(s) | 402, 655 |
| BsmFI | GGGAC | 1 cut(s) | 131 |
| BsnI | GGCC | 4 cut(s) | 5, 90, 191, 358 |
| Bso31I | GGTCTC | 1 cut(s) | 402 |
| Bsp120I | GGGCCC | 1 cut(s) | 356 |
| Bsp1286I | GDGCHC | 1 cut(s) | 360 |
| Bsp143I | GATC | 2 cut(s) | 318, 434 |
| BspACI | CCGC | 7 cut(s) | 87, 138, 153, 165, 208, 616, 626 |
| BspANI | GGCC | 4 cut(s) | 5, 90, 191, 358 |
| BspCNI | CTCAG | 1 cut(s) | 337 |
| BspLI | GGNNCC | 3 cut(s) | 358, 367, 561 |
| BspMAI | CTGCAG | 1 cut(s) | 164 |
| BspMI | ACCTGC | 1 cut(s) | 227 |
| BspPI | GGATC | 1 cut(s) | 442 |
| BspTNI | GGTCTC | 1 cut(s) | 402 |
| BsrBI | CCGCTC | 1 cut(s) | 616 |
| BsrFI | RCCGGY | 1 cut(s) | 452 |
| BsrI | ACTGG | 1 cut(s) | 367 |
| BssAI | RCCGGY | 1 cut(s) | 452 |
| BssECI | CCNNGG | 4 cut(s) | 186, 486, 539, 605 |
| BssMI | GATC | 2 cut(s) | 318, 434 |
| BssT1I | CCWWGG | 2 cut(s) | 186, 605 |
| Bst2UI | CCWGG | 1 cut(s) | 541 |
| Bst4CI | ACNGT | 1 cut(s) | 666 |
| BstBAI | YACGTR | 1 cut(s) | 127 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 157, 240, 534 |
| BstDEI | CTNAG | 2 cut(s) | 345, 554 |
| BstH2I | RGCGCY | 1 cut(s) | 144 |
| BstHHI | GCGC | 3 cut(s) | 143, 341, 477 |
| BstKTI | GATC | 2 cut(s) | 321, 437 |
| BstMAI | GTCTC | 2 cut(s) | 402, 655 |
| BstMBI | GATC | 2 cut(s) | 318, 434 |
| BstMCI | CGRYCG | 1 cut(s) | 486 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 149, 380, 616 |
| BstNI | CCWGG | 1 cut(s) | 541 |
| BstNSI | RCATGY | 1 cut(s) | 536 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 414 |
| BstSCI | CCNGG | 3 cut(s) | 286, 485, 539 |
| BstSFI | CTRYAG | 2 cut(s) | 160, 665 |
| BstSLI | GKGCMC | 1 cut(s) | 360 |
| BstV1I | GCAGC | 3 cut(s) | 146, 174, 287 |
| BstX2I | RGATCY | 1 cut(s) | 434 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 419 |
| BstYI | RGATCY | 1 cut(s) | 434 |
| BsuI | GTATCC | 1 cut(s) | 647 |
| BsuRI | GGCC | 4 cut(s) | 5, 90, 191, 358 |
| BtsIMutI | CAGTG | 2 cut(s) | 342, 360 |
| BveI | ACCTGC | 1 cut(s) | 227 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 157, 240, 534 |
| CfoI | GCGC | 3 cut(s) | 143, 341, 477 |
| Cfr10I | RCCGGY | 1 cut(s) | 452 |
| Cfr13I | GGNCC | 5 cut(s) | 356, 357, 365, 446, 560 |
| CspAI | ACCGGT | 1 cut(s) | 452 |
| CviAII | CATG | 4 cut(s) | 250, 533, 641, 658 |
| DdeI | CTNAG | 2 cut(s) | 345, 554 |
| DpnI | GATC | 2 cut(s) | 320, 436 |
| DpnII | GATC | 2 cut(s) | 318, 434 |
| EaeI | YGGCCR | 3 cut(s) | 3, 88, 189 |
| Eco130I | CCWWGG | 2 cut(s) | 186, 605 |
| Eco24I | GRGCYC | 1 cut(s) | 360 |
| Eco31I | GGTCTC | 1 cut(s) | 402 |
| Eco47I | GGWCC | 3 cut(s) | 365, 446, 560 |
| EcoO109I | RGGNCCY | 2 cut(s) | 446, 560 |
| EcoRII | CCWGG | 1 cut(s) | 539 |
| EcoT14I | CCWWGG | 2 cut(s) | 186, 605 |
| EcoT38I | GRGCYC | 1 cut(s) | 360 |
| ErhI | CCWWGG | 2 cut(s) | 186, 605 |
| FaeI | CATG | 4 cut(s) | 253, 536, 644, 661 |
| FaiI | YATR | 9 cut(s) | 20, 251, 515, 534, 599, 633, 635, 642, 659 |
| FaqI | GGGAC | 1 cut(s) | 131 |
| FatI | CATG | 4 cut(s) | 249, 532, 640, 657 |
| Fnu4HI | GCNGC | 7 cut(s) | 88, 139, 153, 160, 163, 276, 617 |
| FriOI | GRGCYC | 1 cut(s) | 360 |
| Fsp4HI | GCNGC | 7 cut(s) | 88, 139, 153, 160, 163, 276, 617 |
| FspBI | CTAG | 2 cut(s) | 68, 119 |
| GlaI | GCGC | 3 cut(s) | 142, 340, 476 |
| GluI | GCNGC | 7 cut(s) | 88, 139, 153, 160, 163, 276, 617 |
| HaeII | RGCGCY | 1 cut(s) | 144 |
| HaeIII | GGCC | 4 cut(s) | 5, 90, 191, 358 |
| HapII | CCGG | 3 cut(s) | 288, 453, 486 |
| HhaI | GCGC | 3 cut(s) | 143, 341, 477 |
| Hin1II | CATG | 4 cut(s) | 253, 536, 644, 661 |
| Hin6I | GCGC | 3 cut(s) | 141, 339, 475 |
| HinP1I | GCGC | 3 cut(s) | 141, 339, 475 |
| HincII | GTYRAC | 1 cut(s) | 304 |
| HindII | GTYRAC | 1 cut(s) | 304 |
| HindIII | AAGCTT | 2 cut(s) | 23, 372 |
| HinfI | GANTC | 2 cut(s) | 258, 637 |
| HpaI | GTTAAC | 1 cut(s) | 304 |
| HpaII | CCGG | 3 cut(s) | 288, 453, 486 |
| HphI | GGTGA | 2 cut(s) | 102, 109 |
| Hpy166II | GTNNAC | 1 cut(s) | 304 |
| Hpy188I | TCNGA | 1 cut(s) | 483 |
| Hpy188III | TCNNGA | 1 cut(s) | 316 |
| Hpy8I | GTNNAC | 1 cut(s) | 304 |
| HpyCH4III | ACNGT | 1 cut(s) | 666 |
| HpyCH4IV | ACGT | 5 cut(s) | 105, 126, 306, 415, 429 |
| HpyCH4V | TGCA | 4 cut(s) | 162, 222, 275, 532 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 149, 380, 616 |
| HpyF3I | CTNAG | 2 cut(s) | 345, 554 |
| HpySE526I | ACGT | 5 cut(s) | 105, 126, 306, 415, 429 |
| Hsp92II | CATG | 4 cut(s) | 253, 536, 644, 661 |
| HspAI | GCGC | 3 cut(s) | 141, 339, 475 |
| KspAI | GTTAAC | 1 cut(s) | 304 |
| Kzo9I | GATC | 2 cut(s) | 318, 434 |
| LmnI | GCTCC | 1 cut(s) | 649 |
| Lsp1109I | GCAGC | 3 cut(s) | 146, 174, 287 |
| MaeI | CTAG | 2 cut(s) | 68, 119 |
| MaeII | ACGT | 5 cut(s) | 105, 126, 306, 415, 429 |
| MaeIII | GTNAC | 1 cut(s) | 55 |
| MalI | GATC | 2 cut(s) | 320, 436 |
| MbiI | CCGCTC | 1 cut(s) | 616 |
| MboI | GATC | 2 cut(s) | 318, 434 |
| MboII | GAAGA | 1 cut(s) | 142 |
| MfeI | CAATTG | 1 cut(s) | 223 |
| MflI | RGATCY | 1 cut(s) | 434 |
| MhlI | GDGCHC | 1 cut(s) | 360 |
| MlsI | TGGCCA | 2 cut(s) | 5, 191 |
| MluCI | AATT | 1 cut(s) | 223 |
| MluNI | TGGCCA | 2 cut(s) | 5, 191 |
| MlyI | GAGTC | 1 cut(s) | 631 |
| MmeI | TCCRAC | 2 cut(s) | 151, 506 |
| MnlI | CCTC | 5 cut(s) | 239, 337, 484, 497, 561 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 191 |
| MscI | TGGCCA | 2 cut(s) | 5, 191 |
| MseI | TTAA | 2 cut(s) | 180, 303 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 191 |
| MspA1I | CMGCKG | 2 cut(s) | 165, 278 |
| MspI | CCGG | 3 cut(s) | 288, 453, 486 |
| MspR9I | CCNGG | 3 cut(s) | 288, 487, 541 |
| MunI | CAATTG | 1 cut(s) | 223 |
| MvaI | CCWGG | 1 cut(s) | 541 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 149, 380, 616 |
| NciI | CCSGG | 2 cut(s) | 288, 487 |
| NdeII | GATC | 2 cut(s) | 318, 434 |
| NlaIII | CATG | 4 cut(s) | 253, 536, 644, 661 |
| NlaIV | GGNNCC | 3 cut(s) | 358, 367, 561 |
| NspI | RCATGY | 1 cut(s) | 536 |
| PaeI | GCATGC | 1 cut(s) | 536 |
| PaqCI | CACCTGC | 1 cut(s) | 227 |
| PfeI | GAWTC | 1 cut(s) | 258 |
| PinAI | ACCGGT | 1 cut(s) | 452 |
| PkrI | GCNGC | 7 cut(s) | 89, 140, 154, 161, 164, 277, 618 |
| PleI | GAGTC | 1 cut(s) | 631 |
| PpsI | GAGTC | 1 cut(s) | 631 |
| Ppu21I | YACGTR | 1 cut(s) | 127 |
| PpuMI | RGGWCCY | 2 cut(s) | 446, 560 |
| PshAI | GACNNNNGTC | 1 cut(s) | 414 |
| Psp1406I | AACGTT | 2 cut(s) | 105, 306 |
| Psp5II | RGGWCCY | 2 cut(s) | 446, 560 |
| Psp6I | CCWGG | 1 cut(s) | 539 |
| PspGI | CCWGG | 1 cut(s) | 539 |
| PspN4I | GGNNCC | 3 cut(s) | 358, 367, 561 |
| PspOMI | GGGCCC | 1 cut(s) | 356 |
| PspPI | GGNCC | 5 cut(s) | 356, 357, 365, 446, 560 |
| PspPPI | RGGWCCY | 2 cut(s) | 446, 560 |
| PstI | CTGCAG | 1 cut(s) | 164 |
| PsuI | RGATCY | 1 cut(s) | 434 |
| PvuII | CAGCTG | 1 cut(s) | 278 |
| SaqAI | TTAA | 2 cut(s) | 180, 303 |
| SatI | GCNGC | 7 cut(s) | 88, 139, 153, 160, 163, 276, 617 |
| Sau3AI | GATC | 2 cut(s) | 318, 434 |
| Sau96I | GGNCC | 5 cut(s) | 356, 357, 365, 446, 560 |
| SchI | GAGTC | 1 cut(s) | 631 |
| ScrFI | CCNGG | 3 cut(s) | 288, 487, 541 |
| SduI | GDGCHC | 1 cut(s) | 360 |
| SfcI | CTRYAG | 2 cut(s) | 160, 665 |
| SinI | GGWCC | 3 cut(s) | 365, 446, 560 |
| SmlI | CTYRAG | 4 cut(s) | 378, 384, 441, 577 |
| SmoI | CTYRAG | 4 cut(s) | 378, 384, 441, 577 |
| SphI | GCATGC | 1 cut(s) | 536 |
| Sse9I | AATT | 1 cut(s) | 223 |
| SsiI | CCGC | 7 cut(s) | 87, 138, 153, 165, 208, 616, 626 |
| SspMI | CTAG | 2 cut(s) | 68, 119 |
| StyD4I | CCNGG | 3 cut(s) | 286, 485, 539 |
| StyI | CCWWGG | 2 cut(s) | 186, 605 |
| TaaI | ACNGT | 1 cut(s) | 666 |
| TaiI | ACGT | 5 cut(s) | 108, 129, 309, 418, 432 |
| TaqI | TCGA | 1 cut(s) | 11 |
| TasI | AATT | 1 cut(s) | 223 |
| TauI | GCSGC | 4 cut(s) | 90, 141, 155, 619 |
| TfiI | GAWTC | 1 cut(s) | 258 |
| Tru1I | TTAA | 2 cut(s) | 180, 303 |
| Tru9I | TTAA | 2 cut(s) | 180, 303 |
| TscAI | CASTG | 2 cut(s) | 349, 367 |
| TseI | GCWGC | 3 cut(s) | 159, 162, 275 |
| TspDTI | ATGAA | 2 cut(s) | 35, 266 |
| TspGWI | ACGGA | 1 cut(s) | 300 |
| TspRI | CASTG | 2 cut(s) | 349, 367 |
| VpaK11BI | GGWCC | 3 cut(s) | 365, 446, 560 |
| XceI | RCATGY | 1 cut(s) | 536 |
| XspI | CTAG | 2 cut(s) | 68, 119 |