Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018582

Physical Location & Seq

Genomic Coordinates Reverse (-)

16867412 .. 16872353

Gene Structure 4942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023028

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGATTTCTGCATCTACTCTTTAAACTTGGCTGTTGGCAGTGAATCTGGTTTGGTCCGTATTTATAACCTCAAAGGGTGTTCAGATGGGGTAAAATTCCTCTTTGTAACTGAAACCAAATGTGAAGGATCATTGGGTGTTAGTGCTACAAGACAGTACCATTTTAACTCCCTAACTGTTCCGCGCAAAGCAAAAGAAGCAATTGGAGGAATTACCCGTCTTACTCATGCTGATGGTGTGCAAACAATGTTAGAGGTAGTGAGAGGGAAGGATATTTCCATCACTGTTGATATTGAGACAGGGATGCAAGATGGACAAGTCTATTATCCATTTGTTGTTGGAAGAAGACAAGCCTCCTCACTAATCTATCAACCTCGAGGTGCAGATCCAATCGACGACCTCAAACGCCGCTTTGTAGTTTTGCAGCAAAACAAACTTGAATCGCACGGCGACGACAGCCTGGCCTTTATGGTTGACCAGCTCCGCAGGTTACGAATCGAGGAACTCTGGCTCGAGGTCCCCGTCGCGATGTTTCAATCATGTTACGGTTGGTTGACGAGCTCGACAGGCTACGCCGAAAAGCCACTGGAGGCCTTGAAGGAGATTCAATCGCTTGTGCTGCCGGTGAGCTTTGGCCTTTTGCTATCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000137 GO:0000139 GO:0000902 GO:0000904 GO:0002791 GO:0003674 GO:0005096 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006892 GO:0006893 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007409 GO:0008047 GO:0008150 GO:0009653 GO:0009987 GO:0010008 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019900 GO:0019901 GO:0022008 GO:0022607 GO:0030029 GO:0030030 GO:0030036 GO:0030154 GO:0030182 GO:0030234 GO:0030695 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031090 GO:0031175 GO:0031267 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032588 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048193 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0061564 GO:0065003 GO:0065007 GO:0065009 GO:0070201 GO:0071840 GO:0071944 GO:0090087 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0098876 GO:0099568 GO:0120036 GO:0120039 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

218

Amino Acids

24.19

Weight (kDa)

5.96

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018582)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0470721
rosa_laevigata	RLG00000003989 RLG00000023028 RLG00000024339
rosa_roxburghii	Rroxscaffold_7G00173190
rosa_samantha	Rh3BG186600 Rh3CG176800 Rh4AG186800 Rh5AG240200 Rh5BG537500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AbsI	CCTCGAGG	1 cut(s)	375
Acc36I	ACCTGC	1 cut(s)	477
AccII	CGCG	2 cut(s)	184, 527
AciI	CCGC	3 cut(s)	182, 409, 484
AclWI	GGATC	2 cut(s)	136, 380
AcsI	RAATTY	1 cut(s)	95
AfaI	GTAC	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	440, 536, 598, 608
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	3 cut(s)	481, 561, 630
AluI	AGCT	3 cut(s)	481, 561, 630
Alw21I	GWGCWC	1 cut(s)	563
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	136, 380
Ama87I	CYCGRG	2 cut(s)	375, 512
AoxI	GGCC	3 cut(s)	462, 591, 634
ApeKI	GCWGC	2 cut(s)	424, 619
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	55, 517
AsuHPI	GGTGA	1 cut(s)	637
AvaI	CYCGRG	2 cut(s)	375, 512
AvaII	GGWCC	2 cut(s)	55, 517
BanII	GRGCYC	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	436, 606
BccI	CCATC	4 cut(s)	80, 227, 287, 305
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	477
BisI	GCNGC	3 cut(s)	409, 425, 620
BlsI	GCNGC	3 cut(s)	410, 426, 621
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	55, 517
BmeT110I	CYCGRG	2 cut(s)	375, 512
BmgT120I	GGNCC	2 cut(s)	55, 517
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	2 cut(s)	21, 294
BpiI	GAAGAC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	608
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	436, 606
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	2 cut(s)	184, 527
BshFI	GGCC	3 cut(s)	464, 593, 636
BsiHKAI	GWGCWC	1 cut(s)	563
BsiHKCI	CYCGRG	2 cut(s)	375, 512
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	503
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	3 cut(s)	464, 593, 636
BsoBI	CYCGRG	2 cut(s)	375, 512
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	128, 385
Bsp68I	TCGCGA	1 cut(s)	527
BspACI	CCGC	3 cut(s)	182, 409, 484
BspANI	GGCC	3 cut(s)	464, 593, 636
BspFNI	CGCG	2 cut(s)	184, 527
BspLI	GGNNCC	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	136, 380
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	591
BssAI	RCCGGY	1 cut(s)	622
BssMI	GATC	2 cut(s)	128, 385
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	4 cut(s)	156, 178, 286, 548
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	2 cut(s)	184, 527
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	131, 388
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	2 cut(s)	128, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 456, 567, 619
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstUI	CGCG	2 cut(s)	184, 527
BstV1I	GCAGC	2 cut(s)	436, 606
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	464, 593, 636
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	46, 282, 584
BtuMI	TCGCGA	1 cut(s)	527
BveI	ACCTGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	55, 517
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	227, 540
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	2 cut(s)	130, 387
DpnII	GATC	2 cut(s)	128, 385
DraI	TTTAAA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	55, 517
Eco53kI	GAGCTC	1 cut(s)	561
Eco88I	CYCGRG	2 cut(s)	375, 512
EcoICRI	GAGCTC	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	2 cut(s)	230, 543
FaiI	YATR	4 cut(s)	66, 228, 470, 541
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	226, 539
Fnu4HI	GCNGC	3 cut(s)	409, 425, 620
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	409, 425, 620
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	3 cut(s)	409, 425, 620
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	3 cut(s)	464, 593, 636
HapII	CCGG	1 cut(s)	623
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	230, 543
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	2 cut(s)	475, 555
HindII	GTYRAC	2 cut(s)	475, 555
HinfI	GANTC	4 cut(s)	44, 440, 495, 604
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	2 cut(s)	475, 555
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	2 cut(s)	475, 555
Hpy99I	CGWCG	3 cut(s)	398, 455, 527
HpyAV	CCTTC	3 cut(s)	119, 262, 592
HpyCH4III	ACNGT	4 cut(s)	156, 178, 286, 548
HpyCH4V	TGCA	5 cut(s)	12, 241, 307, 383, 424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 456, 567, 619
Hsp92II	CATG	2 cut(s)	230, 543
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	128, 385
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	2 cut(s)	436, 606
LweI	GCATC	2 cut(s)	21, 294
MaeIII	GTNAC	3 cut(s)	106, 489, 542
MalI	GATC	2 cut(s)	130, 387
MboI	GATC	2 cut(s)	128, 385
MboII	GAAGA	2 cut(s)	354, 357
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	3 cut(s)	95, 201, 210
MmeI	TCCRAC	1 cut(s)	319
MseI	TTAA	2 cut(s)	23, 165
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	461
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	2 cut(s)	184, 527
MwoI	GCNNNNNNNGC	4 cut(s)	197, 456, 567, 619
NdeII	GATC	2 cut(s)	128, 385
NlaIII	CATG	2 cut(s)	230, 543
NlaIV	GGNNCC	1 cut(s)	519
NruI	TCGCGA	1 cut(s)	527
PaeR7I	CTCGAG	2 cut(s)	375, 512
PceI	AGGCCT	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	4 cut(s)	44, 440, 495, 604
PkrI	GCNGC	3 cut(s)	410, 426, 621
PpuMI	RGGWCCY	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	2 cut(s)	55, 517
PspPPI	RGGWCCY	1 cut(s)	517
PspXI	VCTCGAGB	2 cut(s)	375, 512
PsuI	RGATCY	1 cut(s)	385
RruI	TCGCGA	1 cut(s)	527
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	23, 165
SatI	GCNGC	3 cut(s)	409, 425, 620
Sau3AI	GATC	2 cut(s)	128, 385
Sau96I	GGNCC	2 cut(s)	55, 517
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	2 cut(s)	21, 294
Sfr274I	CTCGAG	2 cut(s)	375, 512
SinI	GGWCC	2 cut(s)	55, 517
SlaI	CTCGAG	2 cut(s)	375, 512
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	375, 512
SmoI	CTYRAG	2 cut(s)	375, 512
Sse9I	AATT	3 cut(s)	95, 201, 210
SseBI	AGGCCT	1 cut(s)	593
SsiI	CCGC	3 cut(s)	182, 409, 484
SstI	GAGCTC	1 cut(s)	563
StuI	AGGCCT	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	4 cut(s)	156, 178, 286, 548
TaqI	TCGA	5 cut(s)	376, 393, 498, 513, 563
TasI	AATT	3 cut(s)	95, 201, 210
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	4 cut(s)	44, 440, 495, 604
Tru1I	TTAA	2 cut(s)	23, 165
Tru9I	TTAA	2 cut(s)	23, 165
TscAI	CASTG	3 cut(s)	46, 289, 591
TseI	GCWGC	2 cut(s)	424, 619
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	46, 289, 591
VpaK11BI	GGWCC	2 cut(s)	55, 517
XapI	RAATTY	1 cut(s)	95
XhoI	CTCGAG	2 cut(s)	375, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.