WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0470721 |
| rosa_laevigata | RLG00000003989 RLG00000023028 RLG00000024339 |
| rosa_roxburghii | Rroxscaffold_7G00173190 |
| rosa_samantha | Rh3BG186600 Rh3CG176800 Rh4AG186800 Rh5AG240200 Rh5BG537500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 66 |
| AccII | CGCG | 1 cut(s) | 289 |
| AciI | CCGC | 2 cut(s) | 177, 287 |
| AclWI | GGATC | 1 cut(s) | 241 |
| AcsI | RAATTY | 1 cut(s) | 95 |
| AcuI | CTGAAG | 1 cut(s) | 116 |
| AfaI | GTAC | 1 cut(s) | 263 |
| AgsI | TTSAA | 2 cut(s) | 173, 349 |
| AjnI | CCWGG | 1 cut(s) | 394 |
| AluBI | AGCT | 1 cut(s) | 281 |
| AluI | AGCT | 1 cut(s) | 281 |
| Alw21I | GWGCWC | 1 cut(s) | 83 |
| AlwI | GGATC | 1 cut(s) | 241 |
| ApoI | RAATTY | 1 cut(s) | 95 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 129 |
| AspLEI | GCGC | 1 cut(s) | 291 |
| AspS9I | GGNCC | 1 cut(s) | 55 |
| AvaII | GGWCC | 1 cut(s) | 55 |
| Bbv12I | GWGCWC | 1 cut(s) | 83 |
| BccI | CCATC | 2 cut(s) | 80, 524 |
| BciT130I | CCWGG | 1 cut(s) | 396 |
| BfaI | CTAG | 1 cut(s) | 278 |
| Bme1390I | CCNGG | 1 cut(s) | 396 |
| Bme18I | GGWCC | 1 cut(s) | 55 |
| BmgT120I | GGNCC | 1 cut(s) | 55 |
| BmrFI | CCNGG | 1 cut(s) | 396 |
| BmsI | GCATC | 3 cut(s) | 21, 328, 513 |
| Bse1I | ACTGG | 1 cut(s) | 411 |
| Bse3DI | GCAATG | 1 cut(s) | 195 |
| BseBI | CCWGG | 1 cut(s) | 396 |
| BseGI | GGATG | 1 cut(s) | 528 |
| BseMI | GCAATG | 1 cut(s) | 195 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseNI | ACTGG | 1 cut(s) | 411 |
| Bsh1236I | CGCG | 1 cut(s) | 289 |
| BsiHKAI | GWGCWC | 1 cut(s) | 83 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| Bsp1286I | GDGCHC | 1 cut(s) | 83 |
| Bsp143I | GATC | 1 cut(s) | 233 |
| BspACI | CCGC | 2 cut(s) | 177, 287 |
| BspCNI | CTCAG | 1 cut(s) | 95 |
| BspFNI | CGCG | 1 cut(s) | 289 |
| BspPI | GGATC | 1 cut(s) | 241 |
| BsrDI | GCAATG | 1 cut(s) | 195 |
| BsrI | ACTGG | 1 cut(s) | 411 |
| BssMI | GATC | 1 cut(s) | 233 |
| Bst2UI | CCWGG | 1 cut(s) | 396 |
| Bst4CI | ACNGT | 2 cut(s) | 261, 505 |
| BstDEI | CTNAG | 1 cut(s) | 82 |
| BstF5I | GGATG | 1 cut(s) | 528 |
| BstFNI | CGCG | 1 cut(s) | 289 |
| BstHHI | GCGC | 1 cut(s) | 291 |
| BstKTI | GATC | 1 cut(s) | 236 |
| BstMBI | GATC | 1 cut(s) | 233 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 302 |
| BstNI | CCWGG | 1 cut(s) | 396 |
| BstSCI | CCNGG | 1 cut(s) | 394 |
| BstUI | CGCG | 1 cut(s) | 289 |
| BtsCI | GGATG | 1 cut(s) | 528 |
| BtsI | GCAGTG | 2 cut(s) | 46, 168 |
| BtsIMutI | CAGTG | 4 cut(s) | 46, 168, 418, 501 |
| CfoI | GCGC | 1 cut(s) | 291 |
| Cfr13I | GGNCC | 1 cut(s) | 55 |
| Csp6I | GTAC | 1 cut(s) | 262 |
| CviAII | CATG | 4 cut(s) | 146, 182, 332, 403 |
| CviJI | RGCY | 3 cut(s) | 32, 281, 426 |
| CviKI_1 | RGCY | 3 cut(s) | 32, 281, 426 |
| CviQI | GTAC | 1 cut(s) | 262 |
| DdeI | CTNAG | 1 cut(s) | 82 |
| DpnI | GATC | 1 cut(s) | 235 |
| DpnII | GATC | 1 cut(s) | 233 |
| DraI | TTTAAA | 1 cut(s) | 24 |
| Eco47I | GGWCC | 1 cut(s) | 55 |
| Eco57I | CTGAAG | 1 cut(s) | 116 |
| EcoRII | CCWGG | 1 cut(s) | 394 |
| FaeI | CATG | 4 cut(s) | 149, 185, 335, 406 |
| FatI | CATG | 4 cut(s) | 145, 181, 331, 402 |
| FokI | GGATG | 1 cut(s) | 535 |
| FspBI | CTAG | 1 cut(s) | 278 |
| GlaI | GCGC | 1 cut(s) | 290 |
| HhaI | GCGC | 1 cut(s) | 291 |
| Hin1II | CATG | 4 cut(s) | 149, 185, 335, 406 |
| Hin6I | GCGC | 1 cut(s) | 289 |
| HinP1I | GCGC | 1 cut(s) | 289 |
| HinfI | GANTC | 1 cut(s) | 44 |
| Hpy166II | GTNNAC | 2 cut(s) | 155, 408 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 473 |
| Hpy8I | GTNNAC | 2 cut(s) | 155, 408 |
| HpyAV | CCTTC | 2 cut(s) | 343, 482 |
| HpyCH4III | ACNGT | 2 cut(s) | 261, 505 |
| HpyCH4V | TGCA | 7 cut(s) | 12, 161, 188, 341, 386, 461, 526 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 302 |
| HpyF3I | CTNAG | 1 cut(s) | 82 |
| Hsp92II | CATG | 4 cut(s) | 149, 185, 335, 406 |
| HspAI | GCGC | 1 cut(s) | 289 |
| Kzo9I | GATC | 1 cut(s) | 233 |
| LpnPI | CCDG | 5 cut(s) | 33, 381, 408, 424, 439 |
| LweI | GCATC | 3 cut(s) | 21, 328, 513 |
| MaeI | CTAG | 1 cut(s) | 278 |
| MaeIII | GTNAC | 2 cut(s) | 106, 413 |
| MalI | GATC | 1 cut(s) | 235 |
| MboI | GATC | 1 cut(s) | 233 |
| MboII | GAAGA | 2 cut(s) | 7, 214 |
| MfeI | CAATTG | 1 cut(s) | 306 |
| MhlI | GDGCHC | 1 cut(s) | 83 |
| MluCI | AATT | 4 cut(s) | 95, 306, 315, 536 |
| MmeI | TCCRAC | 2 cut(s) | 174, 385 |
| MnlI | CCTC | 7 cut(s) | 80, 110, 143, 305, 402, 467, 477 |
| MroXI | GAANNNNTTC | 1 cut(s) | 129 |
| MseI | TTAA | 3 cut(s) | 23, 270, 356 |
| MslI | CAYNNNNRTG | 1 cut(s) | 336 |
| MspR9I | CCNGG | 1 cut(s) | 396 |
| MunI | CAATTG | 1 cut(s) | 306 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| MvaI | CCWGG | 1 cut(s) | 396 |
| MvnI | CGCG | 1 cut(s) | 289 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 302 |
| NdeII | GATC | 1 cut(s) | 233 |
| NlaIII | CATG | 4 cut(s) | 149, 185, 335, 406 |
| NmuCI | GTSAC | 1 cut(s) | 413 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PdmI | GAANNNNTTC | 1 cut(s) | 129 |
| PfeI | GAWTC | 1 cut(s) | 44 |
| PflFI | GACNNNGTC | 1 cut(s) | 419 |
| PsiI | TTATAA | 1 cut(s) | 66 |
| Psp6I | CCWGG | 1 cut(s) | 394 |
| PspGI | CCWGG | 1 cut(s) | 394 |
| PspPI | GGNCC | 1 cut(s) | 55 |
| PsyI | GACNNNGTC | 1 cut(s) | 419 |
| RsaI | GTAC | 1 cut(s) | 263 |
| RsaNI | GTAC | 1 cut(s) | 262 |
| RseI | CAYNNNNRTG | 1 cut(s) | 336 |
| SaqAI | TTAA | 3 cut(s) | 23, 270, 356 |
| Sau3AI | GATC | 1 cut(s) | 233 |
| Sau96I | GGNCC | 1 cut(s) | 55 |
| ScrFI | CCNGG | 1 cut(s) | 396 |
| SduI | GDGCHC | 1 cut(s) | 83 |
| SetI | ASST | 5 cut(s) | 72, 154, 283, 458, 478 |
| SfaNI | GCATC | 3 cut(s) | 21, 328, 513 |
| SinI | GGWCC | 1 cut(s) | 55 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 336 |
| Sse9I | AATT | 4 cut(s) | 95, 306, 315, 536 |
| SsiI | CCGC | 2 cut(s) | 177, 287 |
| SspI | AATATT | 1 cut(s) | 437 |
| SspMI | CTAG | 1 cut(s) | 278 |
| StyD4I | CCNGG | 1 cut(s) | 394 |
| TaaI | ACNGT | 2 cut(s) | 261, 505 |
| TasI | AATT | 4 cut(s) | 95, 306, 315, 536 |
| TfiI | GAWTC | 1 cut(s) | 44 |
| Tru1I | TTAA | 3 cut(s) | 23, 270, 356 |
| Tru9I | TTAA | 3 cut(s) | 23, 270, 356 |
| TscAI | CASTG | 4 cut(s) | 46, 168, 418, 508 |
| TseFI | GTSAC | 1 cut(s) | 413 |
| Tsp45I | GTSAC | 1 cut(s) | 413 |
| TspDTI | ATGAA | 2 cut(s) | 214, 391 |
| TspGWI | ACGGA | 1 cut(s) | 47 |
| TspRI | CASTG | 4 cut(s) | 46, 168, 418, 508 |
| Tth111I | GACNNNGTC | 1 cut(s) | 419 |
| VpaK11BI | GGWCC | 1 cut(s) | 55 |
| XapI | RAATTY | 1 cut(s) | 95 |
| XmnI | GAANNNNTTC | 1 cut(s) | 129 |
| XspI | CTAG | 1 cut(s) | 278 |