Rh5BG537500

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018582
Physical Location & Seq
Forward (+)
85067713 .. 85098068
30356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG537500.1

Sequence Viewer

Length: 267 bp
ATGGATTTCTGCATCTTCTCTTTAAACTTGGCTGTTGGCAGTGAATCTGGTTTGGTCCGTATTTATAACCTCAAAGGGTGCTCAGATGGGGTAAAATTCCTCTTTGTAACTGAAACCAAATGTGAAGGATCATTGGGTGTTAGTGCTACAAGACAGTACCATTTTAACTCCCTAGCTGTTCCGCGCAAAGCAAAAGAAGCAATTGGAGGAATTACCCGTCTTACTCATGCTGATGGTCAAGATGCCATAGGCCCAAAAACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000137 GO:0000139 GO:0000902 GO:0000904 GO:0002791 GO:0003674 GO:0005096 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006892 GO:0006893 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007409 GO:0008047 GO:0008150 GO:0009653 GO:0009987 GO:0010008 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019900 GO:0019901 GO:0022008 GO:0022607 GO:0030029 GO:0030030 GO:0030036 GO:0030154 GO:0030182 GO:0030234 GO:0030695 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031090 GO:0031175 GO:0031267 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032588 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048193 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0061564 GO:0065003 GO:0065007 GO:0065009 GO:0070201 GO:0071840 GO:0071944 GO:0090087 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0098876 GO:0099568 GO:0120036 GO:0120039 GO:1903530
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC4_WD40 Synaptobrevin

Protein Analysis

88

Amino Acids

9.44

Weight (kDa)

8.54

Isoelectric Point (pI)

15.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018582)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0470721
rosa_laevigata RLG00000003989 RLG00000023028 RLG00000024339
rosa_roxburghii Rroxscaffold_7G00173190
rosa_samantha Rh3BG186600 Rh3CG176800 Rh4AG186800 Rh5AG240200 Rh5BG537500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AccII CGCG 1 cut(s) 184
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 158
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 83
AlwI GGATC 1 cut(s) 136
AoxI GGCC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 55, 251
AvaII GGWCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 83
BccI CCATC 2 cut(s) 80, 227
BfaI CTAG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 251
BmsI GCATC 2 cut(s) 21, 232
BseMII CTCAG 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 83
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 95
BspFNI CGCG 1 cut(s) 184
BspPI GGATC 1 cut(s) 136
BssMI GATC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstUI CGCG 1 cut(s) 184
BsuRI GGCC 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 55, 251
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 227
CviJI RGCY 3 cut(s) 32, 176, 252
CviKI_1 RGCY 3 cut(s) 32, 176, 252
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 82
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
DraI TTTAAA 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 55
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 66, 228, 248
FatI CATG 1 cut(s) 226
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 252
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 128
LpnPI CCDG 1 cut(s) 33
LweI GCATC 2 cut(s) 21, 232
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 1 cut(s) 7
MfeI CAATTG 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 3 cut(s) 95, 201, 210
MnlI CCTC 3 cut(s) 80, 110, 200
MseI TTAA 2 cut(s) 23, 165
MslI CAYNNNNRTG 1 cut(s) 231
MunI CAATTG 1 cut(s) 201
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 128
NlaIII CATG 1 cut(s) 230
PfeI GAWTC 1 cut(s) 44
PsiI TTATAA 1 cut(s) 66
PspPI GGNCC 2 cut(s) 55, 251
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 2 cut(s) 23, 165
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 2 cut(s) 55, 251
SduI GDGCHC 1 cut(s) 83
SetI ASST 2 cut(s) 72, 178
SfaNI GCATC 2 cut(s) 21, 232
SgeI CNNG 8 cut(s) 40, 60, 162, 185, 195, 228, 239, 251
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 3 cut(s) 95, 201, 210
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 156
TasI AATT 3 cut(s) 95, 201, 210
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 23, 165
Tru9I TTAA 2 cut(s) 23, 165
TscAI CASTG 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 95
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.