Rh4AG186800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018582
Physical Location & Seq
Forward (+)
46516981 .. 46528578
11598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG186800.1

Sequence Viewer

Length: 420 bp
ATGGACGACCTCAAACGCCGCTTTGTCGTTTCGCAGCAAAACGAACCTGAATCGCACGGCGACGACAGCCTGGCCTTTATGGTTGACGAGCTCCGCAGGCTACGAGTCGAGGAACTCCGGCGCGAGGTCCCATTTGCGACGTTTCAATGGTGTTATCATTGGTTGACGAGCTCCGCAGGCTACGCCGAGAAGCTGCTGGAGGCCTTGAAGGAGATTCAGTCGCTTGTGCTGCAGACCACAAGACTTCCGCTTCTCATTGTCGCTCGCCGTCAACCTGCCACGGCGTCGTTTCTGCTTCGTGTCGCATTATCGGTGTTTCTCGGCGTTGTCGGTGATAGCCGGAAGGAAGAAGGAGGGAGAGTGGGGGTTTTGGCTTTATGGGACTTGTACGACGGCGTTGGTGATTGGTCTTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.9

Weight (kDa)

5.42

Isoelectric Point (pI)

68.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018582)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0470721
rosa_laevigata RLG00000003989 RLG00000023028 RLG00000024339
rosa_roxburghii Rroxscaffold_7G00173190
rosa_samantha Rh3BG186600 Rh3CG176800 Rh4AG186800 Rh5AG240200 Rh5BG537500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
AccII CGCG 1 cut(s) 123
AciI CCGC 4 cut(s) 19, 94, 174, 248
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 146, 208
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 3 cut(s) 91, 171, 193
AluI AGCT 3 cut(s) 91, 171, 193
Alw21I GWGCWC 2 cut(s) 93, 173
AoxI GGCC 2 cut(s) 72, 201
ApeKI GCWGC 3 cut(s) 34, 193, 229
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 344, 413
AvaII GGWCC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 93, 173
Bbv12I GWGCWC 2 cut(s) 93, 173
BbvI GCAGC 3 cut(s) 46, 180, 216
BceAI ACGGC 4 cut(s) 73, 252, 297, 409
BciT130I CCWGG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 4 cut(s) 19, 35, 194, 230
BlsI GCNGC 4 cut(s) 20, 36, 195, 231
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 124
BseXI GCAGC 3 cut(s) 46, 180, 216
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 74, 203
BsiHKAI GWGCWC 2 cut(s) 93, 173
BsiSI CCGG 2 cut(s) 118, 340
BslFI GGGAC 2 cut(s) 113, 395
BslI CCNNNNNNNGG 1 cut(s) 124
BsmFI GGGAC 2 cut(s) 113, 395
BsnI GGCC 2 cut(s) 74, 203
Bsp1286I GDGCHC 2 cut(s) 93, 173
BspACI CCGC 4 cut(s) 19, 94, 174, 248
BspANI GGCC 2 cut(s) 74, 203
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 234
BspMI ACCTGC 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 279
BssNI GRCGYC 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 98, 178, 265
BstDSI CCRYGG 1 cut(s) 279
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 123
BstMWI GCNNNNNNNGC 5 cut(s) 66, 97, 177, 182, 229
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 230
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 46, 180, 216
BsuRI GGCC 2 cut(s) 74, 203
BtgI CCRYGG 1 cut(s) 279
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 98, 178, 265
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 388
CviQI GTAC 1 cut(s) 388
Ecl136II GAGCTC 2 cut(s) 91, 171
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 2 cut(s) 93, 173
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 2 cut(s) 91, 171
EcoICRI GAGCTC 2 cut(s) 91, 171
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 93, 173
FaiI YATR 2 cut(s) 80, 379
FaqI GGGAC 2 cut(s) 113, 395
Fnu4HI GCNGC 4 cut(s) 19, 35, 194, 230
FriOI GRGCYC 2 cut(s) 93, 173
Fsp4HI GCNGC 4 cut(s) 19, 35, 194, 230
GlaI GCGC 1 cut(s) 122
GluI GCNGC 4 cut(s) 19, 35, 194, 230
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 2 cut(s) 74, 203
HapII CCGG 2 cut(s) 118, 340
HgaI GACGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 284
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 3 cut(s) 85, 165, 272
HindII GTYRAC 3 cut(s) 85, 165, 272
HinfI GANTC 3 cut(s) 50, 105, 214
HpaII CCGG 2 cut(s) 118, 340
HphI GGTGA 2 cut(s) 344, 413
Hpy166II GTNNAC 3 cut(s) 85, 165, 272
Hpy8I GTNNAC 3 cut(s) 85, 165, 272
Hpy99I CGWCG 4 cut(s) 65, 142, 289, 395
HpyAV CCTTC 3 cut(s) 202, 337, 344
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 97, 177, 182, 229
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 284
HspAI GCGC 1 cut(s) 121
LmnI GCTCC 2 cut(s) 96, 176
LpnPI CCDG 9 cut(s) 56, 60, 82, 83, 131, 162, 182, 288, 353
Lsp1109I GCAGC 3 cut(s) 46, 180, 216
MaeII ACGT 1 cut(s) 140
MboII GAAGA 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 93, 173
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 5 cut(s) 20, 103, 118, 193, 347
MspI CCGG 2 cut(s) 118, 340
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 5 cut(s) 66, 97, 177, 182, 229
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 2 cut(s) 211, 300
PceI AGGCCT 1 cut(s) 203
PfeI GAWTC 2 cut(s) 50, 214
PkrI GCNGC 4 cut(s) 20, 36, 195, 231
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 127
Psp124BI GAGCTC 2 cut(s) 93, 173
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 127
PspPPI RGGWCCY 1 cut(s) 127
PstI CTGCAG 1 cut(s) 234
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SacI GAGCTC 2 cut(s) 93, 173
SatI GCNGC 4 cut(s) 19, 35, 194, 230
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 93, 173
SetI ASST 8 cut(s) 12, 49, 93, 129, 143, 173, 195, 277
SfcI CTRYAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 127
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 4 cut(s) 19, 94, 174, 248
SstI GAGCTC 2 cut(s) 93, 173
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 108
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 2 cut(s) 50, 214
TseI GCWGC 3 cut(s) 34, 193, 229
VpaK11BI GGWCC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.