Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013227

Physical Location & Seq

Genomic Coordinates Reverse (-)

352711 .. 355219

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACGACGGTGGTGAAGAGCGTGTTGCAGGCGATCAGAGAGAAAGGTGGTCTCCGGAGTTTCTTGAGGGAGGCGAGGGAAGAAGGTTACCTGAAATGTCTAGCTGATGGAAACCTTCTGCAAACTAAAATCCACAATATTGGGGCAAGGCTTGTTGGTGTTGATAAAGTTGGGAACAAATATTATGAGAAGCTTGACACTCAATATGGAAGACACAGGTGGGTTGAATATGTGGAGAAAGGTCGCTACAATGCTTCTCAAGTGCCACCAGAATGGCATGGTTGGCTACACTACATAACAGATCATACAGGAGACGAGCTTCTGATGCTAAAGCCACAGAGGTATCACCTTGAACACAAGGAAAATTTCACTGGTGAGGGTGATGAGTTTATCTACCACTCCAAAGGGCACAGCCTCAATCCAGGGCAGAGAGACTGGACGAGGTACCAGCCTTGGGAACCAACAAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006979 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFA12

Protein Analysis

158

Amino Acids

18.46

Weight (kDa)

8.56

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUFA12	PF05071	50 - 154	2.9e-26	NADH ubiquinone oxidoreductase subunit NDUFA12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03100 AT3G03100
fragaria_vesca	FvH4_7g33890
malus_domestica	MD01G1235400.v1.1 MD07G1308200.v1.1
prunus_persica	Prupe.2G325400_v2.0.a1 Prupe.2G325400_v2.0.a1
pyrus_communis	pycom07g28040
rosa_chinensis	RchiOBHm_Chr1g0384091
rosa_laevigata	RLG00000026073
rosa_multiflora	Rmu_sc0005139.1_g000018
rosa_roxburghii	Rroxscaffold_4G00277000
rosa_rugosa	Rorug01G0444700
rosa_samantha	Rh1AG470100 Rh1BG427600 Rh1CG440300 Rh1DG460600
rosa_wichuraiana	Rw1G040250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	227, 353
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	3 cut(s)	104, 193, 319
AluI	AGCT	3 cut(s)	104, 193, 319
Alw26I	GTCTC	3 cut(s)	56, 306, 426
Aor13HI	TCCGGA	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	364
Asp718I	GGTACC	1 cut(s)	444
AsuHPI	GGTGA	4 cut(s)	25, 338, 386, 392
BaeGI	GKGCMC	1 cut(s)	411
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
BanI	GGYRCC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	217
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	423
BcoDI	GTCTC	3 cut(s)	56, 306, 426
BfaI	CTAG	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	423
BmiI	GGNNCC	2 cut(s)	446, 459
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	217
BpuEI	CTTGAG	2 cut(s)	85, 243
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	422, 452
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	2 cut(s)	376, 440
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	422, 452
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseNI	ACTGG	2 cut(s)	376, 440
BseSI	GKGCMC	1 cut(s)	411
BshNI	GGYRCC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	3 cut(s)	56, 306, 426
BsmBI	CGTCTC	1 cut(s)	306
Bso31I	GGTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	33, 301
BspEI	TCCGGA	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	446, 459
BspQI	GCTCTTC	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	376, 440
BssECI	CCNNGG	2 cut(s)	422, 452
BssMI	GATC	2 cut(s)	33, 301
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	36, 304
BstMAI	GTCTC	3 cut(s)	56, 306, 426
BstMBI	GATC	2 cut(s)	33, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 325
BstNI	CCWGG	1 cut(s)	423
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	421
BstSLI	GKGCMC	1 cut(s)	411
BstV2I	GAAGAC	1 cut(s)	217
BstXI	CCANNNNNNTGG	2 cut(s)	140, 273
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	8 cut(s)	104, 151, 193, 286, 319, 334, 414, 451
CviKI_1	RGCY	8 cut(s)	104, 151, 193, 286, 319, 334, 414, 451
CviQI	GTAC	1 cut(s)	445
DpnI	GATC	2 cut(s)	35, 303
DpnII	GATC	2 cut(s)	33, 301
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	1 cut(s)	281
FaiI	YATR	6 cut(s)	186, 207, 231, 279, 296, 306
FatI	CATG	1 cut(s)	277
FspBI	CTAG	1 cut(s)	101
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	191
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	4 cut(s)	25, 338, 386, 392
Hpy188I	TCNGA	2 cut(s)	38, 324
Hpy188III	TCNNGA	2 cut(s)	55, 64
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	77, 125
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	28, 121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 325
Hsp92II	CATG	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	54
KpnI	GGTACC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	33, 301
LguI	GCTCTTC	1 cut(s)	11
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	35, 303
MboI	GATC	2 cut(s)	33, 301
MboII	GAAGA	3 cut(s)	28, 92, 222
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	1 cut(s)	364
MnlI	CCTC	7 cut(s)	60, 64, 69, 333, 370, 425, 435
MroI	TCCGGA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	271
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	283, 325
NdeII	GATC	2 cut(s)	33, 301
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	446, 459
PciSI	GCTCTTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	421
PspEI	GGTNACC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	446, 459
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	33, 301
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	64, 258
SmoI	CTYRAG	2 cut(s)	64, 258
Sse9I	AATT	1 cut(s)	364
SspI	AATATT	2 cut(s)	139, 182
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	1 cut(s)	364
TscAI	CASTG	1 cut(s)	376
TspRI	CASTG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	364
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.