RLG00000026769

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019492
Physical Location & Seq
Reverse (-)
5770988 .. 5775598
4611 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026769

Sequence Viewer

Length: 474 bp
ATGGCAGCAAATTGTACCATGATCAGCGAACAGGGTTATGATCGAGCTGAAGAACCCACGACCCAACCCGACGCCGAATCAATCCCCACCATCAACCTCTCCGACCTCCGCTCTGATCGTCTCTCCGCCATCATCGACCCATTTAATTTTAACCACCACATAGTGTTAGATTTGAACAATTCAAGATCCAACCGGGTTCAGACAACACCGAACACAACAAACGATGTCTCTGCCGCCTCCTTGCTCTTCACGACGTCGTTCAGGACGTCGGTGTGGAGAAACTCAACCAGACGGCCAGAGTGGGAGTTAGCTCCGGCGGCGATTGAAATTCACAGAAAGACGAACTCCACCTCGTCTCTGCCGACGAAATCCACCACGTCCTCAACCCTAGATGCCGGAGTAGCCAATATCAGGCGAGATTGCTGTGTTACAAGGAGAGAGAAGAATCGCAGAGAGGAGAAGATAAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.64

Weight (kDa)

6.84

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019492)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026769 RLG00000031276
rosa_multiflora Rmu_sc0000366.1_g000015 Rmu_sc0003863.1_g000012
rosa_samantha Rh4DG099900 Rh6BG445900 Rh6DG455900 Rh7AG260300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 257, 269
AccBSI CCGCTC 1 cut(s) 111
AciI CCGC 4 cut(s) 109, 126, 234, 317
AclWI GGATC 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 69
AcyI GRCGYC 3 cut(s) 72, 254, 266
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 3 cut(s) 175, 183, 326
AjiI CACGTC 1 cut(s) 378
AluBI AGCT 2 cut(s) 47, 311
AluI AGCT 2 cut(s) 47, 311
Alw26I GTCTC 3 cut(s) 125, 232, 360
AlwI GGATC 1 cut(s) 180
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 194
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 98, 137
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 3 cut(s) 125, 232, 360
BfaI CTAG 1 cut(s) 389
BisI GCNGC 3 cut(s) 6, 234, 318
BlsI GCNGC 3 cut(s) 7, 235, 319
Bme1390I CCNGG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 382
BpuMI CCSGG 1 cut(s) 194
BsaHI GRCGYC 3 cut(s) 72, 254, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 295
BsiSI CCGG 3 cut(s) 193, 314, 396
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 3 cut(s) 125, 232, 360
BsmBI CGTCTC 2 cut(s) 125, 360
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 4 cut(s) 21, 40, 115, 185
BspACI CCGC 4 cut(s) 109, 126, 234, 317
BspANI GGCC 1 cut(s) 295
BspPI GGATC 1 cut(s) 180
BspQI GCTCTTC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 111
BssMI GATC 4 cut(s) 21, 40, 115, 185
BssNI GRCGYC 3 cut(s) 72, 254, 266
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 3 cut(s) 72, 254, 266
BstKTI GATC 4 cut(s) 24, 43, 118, 188
BstMAI GTCTC 3 cut(s) 125, 232, 360
BstMBI GATC 4 cut(s) 21, 40, 115, 185
BstMWI GCNNNNNNNGC 2 cut(s) 317, 401
BstSCI CCNGG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 1 cut(s) 295
BtrI CACGTC 1 cut(s) 378
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 15
CviAII CATG 1 cut(s) 19
CviJI RGCY 4 cut(s) 47, 295, 311, 404
CviKI_1 RGCY 4 cut(s) 47, 295, 311, 404
CviQI GTAC 1 cut(s) 15
DpnI GATC 4 cut(s) 23, 42, 117, 187
DpnII GATC 4 cut(s) 21, 40, 115, 185
DraIII CACNNNGTG 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 69
Esp3I CGTCTC 2 cut(s) 125, 360
FaeI CATG 1 cut(s) 22
FaiI YATR 3 cut(s) 20, 39, 161
FatI CATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 6, 234, 318
Fsp4HI GCNGC 3 cut(s) 6, 234, 318
FspBI CTAG 1 cut(s) 389
GluI GCNGC 3 cut(s) 6, 234, 318
HaeIII GGCC 1 cut(s) 295
HapII CCGG 3 cut(s) 193, 314, 396
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 3 cut(s) 72, 254, 266
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 77, 445
HpaII CCGG 3 cut(s) 193, 314, 396
Hpy188I TCNGA 3 cut(s) 103, 115, 201
Hpy188III TCNNGA 3 cut(s) 183, 250, 262
Hpy99I CGWCG 5 cut(s) 74, 256, 259, 271, 367
HpyCH4IV ACGT 3 cut(s) 254, 266, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 401
HpySE526I ACGT 3 cut(s) 254, 266, 377
Hsp92I GRCGYC 3 cut(s) 72, 254, 266
Hsp92II CATG 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 4 cut(s) 21, 40, 115, 185
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 8 cut(s) 17, 206, 247, 301, 309, 327, 397, 409
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 389
MaeII ACGT 3 cut(s) 254, 266, 377
MaeIII GTNAC 1 cut(s) 427
MalI GATC 4 cut(s) 23, 42, 117, 187
MbiI CCGCTC 1 cut(s) 111
MboI GATC 4 cut(s) 21, 40, 115, 185
MboII GAAGA 4 cut(s) 62, 238, 454, 472
MflI RGATCY 1 cut(s) 185
MluCI AATT 4 cut(s) 10, 145, 178, 327
MmeI TCCRAC 2 cut(s) 126, 213
MnlI CCTC 6 cut(s) 107, 116, 247, 361, 391, 448
MseI TTAA 2 cut(s) 144, 150
MspI CCGG 3 cut(s) 193, 314, 396
MspR9I CCNGG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 317, 401
NciI CCSGG 1 cut(s) 194
NdeII GATC 4 cut(s) 21, 40, 115, 185
NlaIII CATG 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 263, 359
PfeI GAWTC 2 cut(s) 77, 445
PkrI GCNGC 3 cut(s) 7, 235, 319
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 144, 150
SatI GCNGC 3 cut(s) 6, 234, 318
Sau3AI GATC 4 cut(s) 21, 40, 115, 185
ScrFI CCNGG 1 cut(s) 194
SetI ASST 8 cut(s) 49, 99, 108, 257, 269, 313, 353, 380
SfaNI GCATC 1 cut(s) 382
Sse9I AATT 4 cut(s) 10, 145, 178, 327
SsiI CCGC 4 cut(s) 109, 126, 234, 317
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 192
TaiI ACGT 3 cut(s) 257, 269, 380
TaqI TCGA 2 cut(s) 43, 135
TasI AATT 4 cut(s) 10, 145, 178, 327
TauI GCSGC 2 cut(s) 236, 320
TfiI GAWTC 2 cut(s) 77, 445
Tru1I TTAA 2 cut(s) 144, 150
Tru9I TTAA 2 cut(s) 144, 150
TseI GCWGC 1 cut(s) 5
XapI RAATTY 1 cut(s) 327
XspI CTAG 1 cut(s) 389
ZraI GACGTC 2 cut(s) 255, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.