Rh6DG455900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0019492
Physical Location & Seq
Reverse (-)
62689666 .. 62689905
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG455900.1

Sequence Viewer

Length: 240 bp
ATGTTGCAGGGAAGAAATCTGGGAGATCTTCGGAGAATTGAGCATTGTTGGGCTGTGAAGGCCACTGTGTCTCCCTTGTTCAAGACGCTGGTGTGGGGAAACTCAACTAGACAGCCAGAGTGGGAGGCCCACTCGGCAAAGGAGACGTTGAGGTCAAGGGAGAGATTTCCTCTCGTCAACGGCGCCGGGAAATTGGTCTTGGCCTGGTTGCAGCGGAGAAACCTGGCGGCATCGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.01

Weight (kDa)

11.2

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019492)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026769 RLG00000031276
rosa_multiflora Rmu_sc0000366.1_g000015 Rmu_sc0003863.1_g000012
rosa_samantha Rh4DG099900 Rh6BG445900 Rh6DG455900 Rh7AG260300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 2 cut(s) 214, 227
AcyI GRCGYC 1 cut(s) 183
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 2 cut(s) 203, 222
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
Alw26I GTCTC 2 cut(s) 75, 137
AoxI GGCC 3 cut(s) 60, 126, 201
ApeKI GCWGC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 127
AsuC2I CCSGG 1 cut(s) 187
BanI GGYRCC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 205, 224
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 75, 137
BfaI CTAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 186
BglI GCCNNNNNGGC 1 cut(s) 134
BglII AGATCT 1 cut(s) 25
BisI GCNGC 2 cut(s) 212, 228
BlsI GCNGC 2 cut(s) 213, 229
Bme1390I CCNGG 3 cut(s) 187, 205, 224
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 3 cut(s) 187, 205, 224
BplI GAGNNNNNCTC 4 cut(s) 116, 148, 154, 186
BpuMI CCSGG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
BseBI CCWGG 2 cut(s) 205, 224
BseXI GCAGC 1 cut(s) 223
BshFI GGCC 3 cut(s) 62, 128, 203
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 75, 137
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 3 cut(s) 62, 128, 203
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 2 cut(s) 214, 227
BspANI GGCC 3 cut(s) 62, 128, 203
BspLI GGNNCC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 182
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 205, 224
Bst4CI ACNGT 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 2 cut(s) 75, 137
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 59, 134
BstNI CCWGG 2 cut(s) 205, 224
BstSCI CCNGG 3 cut(s) 185, 203, 222
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 3 cut(s) 62, 128, 203
BtsIMutI CAGTG 1 cut(s) 63
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 1 cut(s) 94
CviJI RGCY 5 cut(s) 53, 62, 115, 128, 203
CviKI_1 RGCY 5 cut(s) 53, 62, 115, 128, 203
DinI GGCGCC 1 cut(s) 184
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 203, 222
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 137
FaiI YATR 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 212, 228
Fsp4HI GCNGC 2 cut(s) 212, 228
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 212, 228
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 3 cut(s) 62, 128, 203
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 183
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 7, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 134
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 183
HspAI GCGC 1 cut(s) 183
KasI GGCGCC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 8 cut(s) 5, 74, 129, 190, 199, 209, 217, 236
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 146
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 20, 24
MflI RGATCY 1 cut(s) 25
MluCI AATT 2 cut(s) 36, 191
Mly113I GGCGCC 1 cut(s) 183
MnlI CCTC 3 cut(s) 118, 144, 180
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 3 cut(s) 187, 205, 224
MvaI CCWGG 2 cut(s) 205, 224
MwoI GCNNNNNNNGC 2 cut(s) 59, 134
NarI GGCGCC 1 cut(s) 183
NciI CCSGG 1 cut(s) 187
NdeII GATC 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 113
PkrI GCNGC 2 cut(s) 213, 229
PluTI GGCGCC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 203, 222
PspGI CCWGG 2 cut(s) 203, 222
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 25
SatI GCNGC 2 cut(s) 212, 228
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 127
ScrFI CCNGG 3 cut(s) 187, 205, 224
SetI ASST 3 cut(s) 149, 155, 225
SfoI GGCGCC 1 cut(s) 184
Sse9I AATT 2 cut(s) 36, 191
SsiI CCGC 2 cut(s) 214, 227
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 185, 203, 222
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 149
TasI AATT 2 cut(s) 36, 191
TauI GCSGC 1 cut(s) 230
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 211
TspRI CASTG 1 cut(s) 70
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.