Rmu_sc0000366.1_g000015

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000366.1
OG0019492
Physical Location & Seq
Forward (+)
70503 .. 71021
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000366.1_g000015.1.cds

Sequence Viewer

Length: 519 bp
atggcggcaaattgtaccatgatcggcgaacagggttatgatcgagctgaagaagtaaagcaattcgacgactctaaactcggagtcaaaggcctcgtcgactcgggtctctcctccatcccccgaatctttatccacccacccataatatcacaccaattccagcccgcgacccaacccctcgccgaatcaatccccaccatcagcctctccgacctccactctgatcattgctccgccatcgtcgacccatttaattttaaccaccacacagtgttagatttgaacaattcaagatccaagcgggttcagacaacaccagacataacaaacgatgtccccgcctcctcttttctcttcatgacgtcggtgtggagaaactcaactagacggccggagtgggaggcccactgggcggaggagatgttgaggtcgagggagaaatctcctctggtcagcggagtcaggaagttggtcttggccttgttgctgcagagagacatggcggggccgtcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

172

Amino Acids

19.23

Weight (kDa)

6.14

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019492)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026769 RLG00000031276
rosa_multiflora Rmu_sc0000366.1_g000015 Rmu_sc0003863.1_g000012
rosa_samantha Rh4DG099900 Rh6BG445900 Rh6DG455900 Rh7AG260300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 368
AccI GTMKAC 2 cut(s) 99, 246
AccII CGCG 1 cut(s) 170
AciI CCGC 8 cut(s) 5, 168, 237, 304, 342, 416, 459, 506
AclWI GGATC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 365
AdeI CACNNNGTG 1 cut(s) 274
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 2 cut(s) 286, 294
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw26I GTCTC 2 cut(s) 113, 492
AlwI GGATC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 103
AoxI GGCC 5 cut(s) 91, 392, 405, 480, 509
ApeKI GCWGC 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspS9I GGNCC 2 cut(s) 406, 509
AvaI CYCGRG 1 cut(s) 103
BbvI GCAGC 1 cut(s) 477
BccI CCATC 3 cut(s) 125, 209, 248
BceAI ACGGC 2 cut(s) 407, 496
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 113, 492
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 491
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 2 cut(s) 6, 491
BlsI GCNGC 2 cut(s) 7, 492
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 406, 509
BmiI GGNNCC 1 cut(s) 510
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BoxI GACNNNNGTC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 229
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 4 cut(s) 103, 337, 434, 438
BseX3I CGGCCG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 395
BshFI GGCC 5 cut(s) 93, 394, 407, 482, 511
BsiEI CGRYCG 1 cut(s) 395
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 113, 492
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 5 cut(s) 93, 394, 407, 482, 511
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 103
Bsp143I GATC 4 cut(s) 21, 40, 226, 296
BspACI CCGC 8 cut(s) 5, 168, 237, 304, 342, 416, 459, 506
BspANI GGCC 5 cut(s) 93, 394, 407, 482, 511
BspFNI CGCG 1 cut(s) 170
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 495
BspPI GGATC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 416
BssMI GATC 4 cut(s) 21, 40, 226, 296
BssNI GRCGYC 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 168
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 4 cut(s) 24, 43, 229, 299
BstMAI GTCTC 2 cut(s) 113, 492
BstMBI GATC 4 cut(s) 21, 40, 226, 296
BstMCI CGRYCG 1 cut(s) 395
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstPAI GACNNNNGTC 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 491
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BstZI CGGCCG 1 cut(s) 392
BsuRI GGCC 5 cut(s) 93, 394, 407, 482, 511
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 279, 409
Cac8I GCNNGC 1 cut(s) 168
CciI TCATGA 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 406, 509
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 19, 361, 502
CviJI RGCY 8 cut(s) 47, 93, 166, 207, 394, 407, 482, 511
CviKI_1 RGCY 8 cut(s) 47, 93, 166, 207, 394, 407, 482, 511
CviQI GTAC 1 cut(s) 15
DpnI GATC 4 cut(s) 23, 42, 228, 298
DpnII GATC 4 cut(s) 21, 40, 226, 296
DraIII CACNNNGTG 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 392
EagI CGGCCG 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 2 cut(s) 226, 431
EclXI CGGCCG 1 cut(s) 392
Eco147I AGGCCT 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 113
Eco52I CGGCCG 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 103
FaeI CATG 3 cut(s) 22, 364, 505
FaiI YATR 6 cut(s) 20, 39, 146, 326, 362, 503
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 18, 360, 501
FauI CCCGC 4 cut(s) 175, 297, 349, 499
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 2 cut(s) 99, 246
Fnu4HI GCNGC 2 cut(s) 6, 491
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 6, 491
FspBI CTAG 1 cut(s) 387
GluI GCNGC 2 cut(s) 6, 491
HaeIII GGCC 5 cut(s) 93, 394, 407, 482, 511
HapII CCGG 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 3 cut(s) 22, 364, 505
HincII GTYRAC 2 cut(s) 100, 247
HindII GTYRAC 2 cut(s) 100, 247
HinfI GANTC 6 cut(s) 71, 84, 101, 126, 188, 462
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 100, 247
Hpy188I TCNGA 4 cut(s) 83, 214, 226, 312
Hpy188III TCNNGA 3 cut(s) 294, 361, 466
Hpy8I GTNNAC 2 cut(s) 100, 247
Hpy99I CGWCG 5 cut(s) 71, 101, 248, 370, 517
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 493
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpySE526I ACGT 1 cut(s) 365
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 3 cut(s) 22, 364, 505
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 4 cut(s) 21, 40, 226, 296
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 7 cut(s) 17, 176, 333, 397, 408, 437, 451
Lsp1109I GCAGC 1 cut(s) 477
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 365
MalI GATC 4 cut(s) 23, 42, 228, 298
MboI GATC 4 cut(s) 21, 40, 226, 296
MboII GAAGA 2 cut(s) 62, 349
MflI RGATCY 1 cut(s) 296
MluCI AATT 5 cut(s) 10, 62, 158, 256, 289
MlyI GAGTC 4 cut(s) 65, 93, 95, 471
MmeI TCCRAC 1 cut(s) 237
MseI TTAA 2 cut(s) 255, 261
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 1 cut(s) 395
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 413
NdeII GATC 4 cut(s) 21, 40, 226, 296
NlaIII CATG 3 cut(s) 22, 364, 505
NlaIV GGNNCC 1 cut(s) 510
PagI TCATGA 1 cut(s) 360
PceI AGGCCT 1 cut(s) 93
PfeI GAWTC 2 cut(s) 126, 188
PkrI GCNGC 2 cut(s) 7, 492
PleI GAGTC 4 cut(s) 65, 92, 95, 470
PpsI GAGTC 4 cut(s) 65, 92, 95, 470
PshAI GACNNNNGTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 2 cut(s) 406, 509
PstI CTGCAG 1 cut(s) 495
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SalI GTCGAC 2 cut(s) 98, 245
SaqAI TTAA 2 cut(s) 255, 261
SatI GCNGC 2 cut(s) 6, 491
Sau3AI GATC 4 cut(s) 21, 40, 226, 296
Sau96I GGNCC 2 cut(s) 406, 509
SchI GAGTC 4 cut(s) 65, 93, 95, 471
SetI ASST 4 cut(s) 49, 219, 368, 434
SfcI CTRYAG 1 cut(s) 491
Sse9I AATT 5 cut(s) 10, 62, 158, 256, 289
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 8 cut(s) 5, 168, 237, 304, 342, 416, 459, 506
SspMI CTAG 1 cut(s) 387
StuI AGGCCT 1 cut(s) 93
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 368
TaqI TCGA 5 cut(s) 43, 66, 99, 246, 434
TasI AATT 5 cut(s) 10, 62, 158, 256, 289
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 126, 188
Tru1I TTAA 2 cut(s) 255, 261
Tru9I TTAA 2 cut(s) 255, 261
TscAI CASTG 2 cut(s) 279, 416
TseI GCWGC 1 cut(s) 490
TspDTI ATGAA 1 cut(s) 349
TspRI CASTG 2 cut(s) 279, 416
XmiI GTMKAC 2 cut(s) 99, 246
XspI CTAG 1 cut(s) 387
ZraI GACGTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.