Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018730

Physical Location & Seq

Genomic Coordinates Forward (+)

7755078 .. 7755566

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCGACTAAAGATTCTTCTGGACCCTTCCATGGCCACTACACCGTCCTCGACGACAAAGAGTTCCAAGTAAAGGGCCGCACCCTCTTCTTCGTCGTGATTCTCTTCACCGTCGTCCTCCTCGTCACCGTCTTCTTGCTCTACGCGAGATGGGTTTGCCGCTACCGCCCCTCCAACTCACCTTTCTCTTCACACGCGCCTAACGCGCCGCCGCAGAAGCCGCATGGCCTCGACGCTGCCCTGATTCGAGGCTTGCCGATAATCTTGTACCAGTCCTCCGGCAATTCGGAGGCGGCTGGCTGCGGTGAGTGTTCTATATGTCTCGGAGTTTTCGAAGACGGCGAGAAGGTTAAGGTTCTCCCTCAGTGCCGCCATTGCTACCACTCTGACTGCGTCGATACGTGGCTGAGCGCTCAGTCCAGTTGCCCGCTCTGCCGTACTTCTCTCCGGTCAAACTCCGATGGCGCTCTGCAAATTGTCGTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

163

Amino Acids

17.81

Weight (kDa)

7.57

Isoelectric Point (pI)

53.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	103 - 146	1.7e-14	Ring finger domain
zf-RING_11	PF17123	103 - 132	1.9e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	103 - 145	3.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	104 - 145	7.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	112 - 146	2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018730)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24750
rosa_chinensis	RchiOBHm_Chr1g0370601
rosa_laevigata	RLG00000027024
rosa_multiflora	Rmu_sc0002021.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286400
rosa_rugosa	Rorug01G0358000
rosa_samantha	Rh1BG330700 Rh1DG362200
rosa_wichuraiana	Rw1G032330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	3 cut(s)	146, 197, 206
AcoI	YGGCCR	1 cut(s)	34
AfaI	GTAC	3 cut(s)	269, 439, 483
AfeI	AGCGCT	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	32, 73
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
Alw26I	GTCTC	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	412
AoxI	GGCC	3 cut(s)	34, 76, 226
ApeKI	GCWGC	2 cut(s)	236, 300
AspLEI	GCGC	4 cut(s)	199, 208, 413, 467
AspS9I	GGNCC	2 cut(s)	23, 76
AsuHPI	GGTGA	4 cut(s)	100, 118, 171, 317
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	124, 342
BbvI	GCAGC	2 cut(s)	223, 287
BccI	CCATC	2 cut(s)	144, 455
BceAI	ACGGC	2 cut(s)	355, 420
BcoDI	GTCTC	1 cut(s)	326
BfoI	RGCGCY	2 cut(s)	414, 468
BisI	GCNGC	9 cut(s)	79, 160, 209, 212, 221, 237, 294, 301, 370
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	9 cut(s)	80, 161, 210, 213, 222, 238, 295, 302, 371
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 76
BmiI	GGNNCC	1 cut(s)	25
BpiI	GAAGAC	2 cut(s)	124, 342
Bpu1102I	GCTNAGC	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 73
Bse1I	ACTGG	2 cut(s)	271, 420
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	32, 73
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	3 cut(s)	377, 398, 428
BseNI	ACTGG	2 cut(s)	271, 420
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	223, 287
Bsh1236I	CGCG	3 cut(s)	146, 197, 206
BshFI	GGCC	3 cut(s)	36, 78, 228
BsiSI	CCGG	2 cut(s)	279, 448
BslI	CCNNNNNNNGG	2 cut(s)	32, 73
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	36, 78, 228
Bsp119I	TTCGAA	1 cut(s)	333
Bsp1720I	GCTNAGC	1 cut(s)	407
Bsp19I	CCATGG	1 cut(s)	31
BspANI	GGCC	3 cut(s)	36, 78, 228
BspCNI	CTCAG	3 cut(s)	376, 399, 427
BspFNI	CGCG	3 cut(s)	146, 197, 206
BspLI	GGNNCC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	271, 420
BssECI	CCNNGG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	4 cut(s)	46, 112, 130, 486
Bst6I	CTCTTC	3 cut(s)	92, 110, 193
BstBAI	YACGTR	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	254, 298, 428
BstDEI	CTNAG	3 cut(s)	363, 407, 414
BstDSI	CCRYGG	1 cut(s)	31
BstFNI	CGCG	3 cut(s)	146, 197, 206
BstH2I	RGCGCY	2 cut(s)	414, 468
BstHHI	GCGC	4 cut(s)	199, 208, 413, 467
BstMAI	GTCTC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	7 cut(s)	165, 203, 205, 217, 220, 375, 432
BstUI	CGCG	3 cut(s)	146, 197, 206
BstV1I	GCAGC	2 cut(s)	223, 287
BstV2I	GAAGAC	2 cut(s)	124, 342
BsuRI	GGCC	3 cut(s)	36, 78, 228
BtgI	CCRYGG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	3 cut(s)	254, 298, 428
CfoI	GCGC	4 cut(s)	199, 208, 413, 467
Cfr13I	GGNCC	2 cut(s)	23, 76
CseI	GACGC	2 cut(s)	242, 382
Csp6I	GTAC	3 cut(s)	268, 438, 482
CviAII	CATG	2 cut(s)	32, 224
CviJI	RGCY	8 cut(s)	36, 78, 220, 228, 252, 296, 300, 406
CviKI_1	RGCY	8 cut(s)	36, 78, 220, 228, 252, 296, 300, 406
CviQI	GTAC	3 cut(s)	268, 438, 482
DdeI	CTNAG	3 cut(s)	363, 407, 414
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	92, 110, 193
EarI	CTCTTC	3 cut(s)	92, 110, 193
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	23
Eco47III	AGCGCT	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	35, 227
FaiI	YATR	4 cut(s)	33, 225, 317, 319
FatI	CATG	2 cut(s)	31, 223
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	9 cut(s)	79, 160, 209, 212, 221, 237, 294, 301, 370
Fsp4HI	GCNGC	9 cut(s)	79, 160, 209, 212, 221, 237, 294, 301, 370
GlaI	GCGC	4 cut(s)	198, 207, 412, 466
GluI	GCNGC	9 cut(s)	79, 160, 209, 212, 221, 237, 294, 301, 370
HaeII	RGCGCY	2 cut(s)	414, 468
HaeIII	GGCC	3 cut(s)	36, 78, 228
HapII	CCGG	2 cut(s)	279, 448
HgaI	GACGC	2 cut(s)	242, 382
HhaI	GCGC	4 cut(s)	199, 208, 413, 467
Hin1II	CATG	2 cut(s)	35, 227
Hin6I	GCGC	4 cut(s)	197, 206, 411, 465
HinP1I	GCGC	4 cut(s)	197, 206, 411, 465
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	14, 100, 244
HpaII	CCGG	2 cut(s)	279, 448
HphI	GGTGA	4 cut(s)	100, 118, 171, 317
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	289, 326, 388, 460
Hpy188III	TCNNGA	2 cut(s)	21, 97
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	5 cut(s)	56, 98, 116, 236, 398
HpyAV	CCTTC	2 cut(s)	37, 340
HpyCH4III	ACNGT	4 cut(s)	46, 112, 130, 486
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	1 cut(s)	472
HpyF10VI	GCNNNNNNNGC	7 cut(s)	165, 203, 205, 217, 220, 375, 432
HpyF3I	CTNAG	3 cut(s)	363, 407, 414
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	2 cut(s)	35, 227
HspAI	GCGC	4 cut(s)	197, 206, 411, 465
LpnPI	CCDG	7 cut(s)	6, 254, 282, 284, 292, 433, 461
Lsp1109I	GCAGC	2 cut(s)	223, 287
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	124
MbiI	CCGCTC	1 cut(s)	430
MboII	GAAGA	7 cut(s)	9, 79, 82, 97, 124, 180, 347
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	2 cut(s)	283, 474
MluNI	TGGCCA	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	2 cut(s)	279, 448
MvnI	CGCG	3 cut(s)	146, 197, 206
MwoI	GCNNNNNNNGC	7 cut(s)	165, 203, 205, 217, 220, 375, 432
NcoI	CCATGG	1 cut(s)	31
NlaIII	CATG	2 cut(s)	35, 227
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 330, 339
PfeI	GAWTC	3 cut(s)	14, 100, 244
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	9 cut(s)	80, 161, 210, 213, 222, 238, 295, 302, 371
Ppu21I	YACGTR	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	23, 76
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	3 cut(s)	269, 439, 483
RsaNI	GTAC	3 cut(s)	268, 438, 482
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	9 cut(s)	79, 160, 209, 212, 221, 237, 294, 301, 370
Sau96I	GGNCC	2 cut(s)	23, 76
SetI	ASST	4 cut(s)	184, 351, 357, 404
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	283, 474
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	4 cut(s)	46, 112, 130, 486
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	6 cut(s)	5, 51, 231, 247, 333, 396
TasI	AATT	2 cut(s)	283, 474
TauI	GCSGC	7 cut(s)	81, 162, 211, 214, 223, 296, 372
TfiI	GAWTC	3 cut(s)	14, 100, 244
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	236, 300
Tsp45I	GTSAC	1 cut(s)	124
TspRI	CASTG	1 cut(s)	371
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.