Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018730

Physical Location & Seq

Genomic Coordinates Reverse (-)

46753119 .. 46755759

Gene Structure 2641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG330700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACGACTAAAGATTCTTCTGGACCCTTCCATGGCCACTACACCGTCCTCGACGACAAAGAGTTCCAAGTAAAGGGCCGCACCCTCTTCTTCGTCGTGATCCTCTTCACCGTCGTCCTACTCGTCACCGTCTTCTTGCTCTACGCGAGATGGGTTTGCCGCTACCGCCCCTCCAACTCACCTTTCTCTTTACACGCGCCGAACGAGCCGTCGCAGAAGCCGCGCGGCCTCGACGCTGCCCTGATTCGAGGCTTGCCGATAATCTTGTACCAGTCCTCCGGCAATTCGGAGACGGCTGGCTGCGGTGAGTGTTCTATATGTCTCGGAGTTTTCGAAGACGGCGAGAAGGTTAAGGTTCTCCCTCAGTGCCGCCATTGCTATCACTCTGACTGCGTCGATACGTGGCTGAGCGCTCAGTCCAGTTGCCCGCTCTGCCTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCCAAGTAGTCGCCTTCATCGATCGACGTTCAGCTCGCCGGAATTTCCTTGTTTTCGTGTTTCTAATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

188

Amino Acids

21.26

Weight (kDa)

5.39

Isoelectric Point (pI)

58.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	103 - 145	1.7e-13	Ring finger domain
zf-RING_11	PF17123	103 - 132	2.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	103 - 145	4.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	104 - 145	9.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	112 - 145	1.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018730)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24750
rosa_chinensis	RchiOBHm_Chr1g0370601
rosa_laevigata	RLG00000027024
rosa_multiflora	Rmu_sc0002021.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286400
rosa_rugosa	Rorug01G0358000
rosa_samantha	Rh1BG330700 Rh1DG362200
rosa_wichuraiana	Rw1G032330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	430
AccII	CGCG	4 cut(s)	146, 197, 223, 225
AciI	CCGC	8 cut(s)	79, 160, 166, 221, 225, 303, 370, 428
AclWI	GGATC	2 cut(s)	94, 487
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	535
AfaI	GTAC	1 cut(s)	269
AfeI	AGCGCT	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	32, 73
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	435
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	3 cut(s)	284, 326, 479
AlwI	GGATC	2 cut(s)	94, 487
Aor51HI	AGCGCT	1 cut(s)	412
AoxI	GGCC	3 cut(s)	34, 76, 226
ApeKI	GCWGC	2 cut(s)	236, 300
ApoI	RAATTY	1 cut(s)	535
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	4 cut(s)	199, 225, 413, 475
AspS9I	GGNCC	2 cut(s)	23, 76
AsuHPI	GGTGA	4 cut(s)	100, 118, 171, 317
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	124, 342
BbvI	GCAGC	2 cut(s)	223, 287
BccI	CCATC	1 cut(s)	144
BceAI	ACGGC	3 cut(s)	193, 309, 355
BciT130I	CCWGG	1 cut(s)	437
BcoDI	GTCTC	3 cut(s)	284, 326, 479
BfoI	RGCGCY	2 cut(s)	414, 476
BisI	GCNGC	7 cut(s)	79, 160, 221, 226, 237, 301, 370
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	7 cut(s)	80, 161, 222, 227, 238, 302, 371
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 76
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	437
BpiI	GAAGAC	2 cut(s)	124, 342
Bpu1102I	GCTNAGC	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	333
Bsa29I	ATCGAT	1 cut(s)	513
BsaAI	YACGTR	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 73
Bse1I	ACTGG	2 cut(s)	271, 420
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	437
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	32, 73
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	3 cut(s)	377, 398, 428
BseNI	ACTGG	2 cut(s)	271, 420
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	223, 287
Bsh1236I	CGCG	4 cut(s)	146, 197, 223, 225
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	3 cut(s)	36, 78, 228
BshVI	ATCGAT	1 cut(s)	513
BsiEI	CGRYCG	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	279, 532
BslI	CCNNNNNNNGG	2 cut(s)	32, 73
BsmAI	GTCTC	3 cut(s)	284, 326, 479
BsmBI	CGTCTC	1 cut(s)	284
BsnI	GGCC	3 cut(s)	36, 78, 228
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	99, 492, 514
Bsp1720I	GCTNAGC	1 cut(s)	407
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	8 cut(s)	79, 160, 166, 221, 225, 303, 370, 428
BspANI	GGCC	3 cut(s)	36, 78, 228
BspCNI	CTCAG	3 cut(s)	376, 399, 427
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	4 cut(s)	146, 197, 223, 225
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	94, 487
BspT104I	TTCGAA	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	271, 420
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	99, 492, 514
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	46, 112, 130
Bst6I	CTCTTC	3 cut(s)	92, 110, 459
BstBAI	YACGTR	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	254, 298, 428, 529
BstDEI	CTNAG	3 cut(s)	363, 407, 414
BstDSI	CCRYGG	1 cut(s)	31
BstFNI	CGCG	4 cut(s)	146, 197, 223, 225
BstH2I	RGCGCY	2 cut(s)	414, 476
BstHHI	GCGC	4 cut(s)	199, 225, 413, 475
BstKTI	GATC	3 cut(s)	102, 495, 517
BstMAI	GTCTC	3 cut(s)	284, 326, 479
BstMBI	GATC	3 cut(s)	99, 492, 514
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 205, 220, 375, 432
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	435
BstUI	CGCG	4 cut(s)	146, 197, 223, 225
BstV1I	GCAGC	2 cut(s)	223, 287
BstV2I	GAAGAC	2 cut(s)	124, 342
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	3 cut(s)	36, 78, 228
BsuTUI	ATCGAT	1 cut(s)	513
BtgI	CCRYGG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	4 cut(s)	254, 298, 428, 529
CfoI	GCGC	4 cut(s)	199, 225, 413, 475
Cfr13I	GGNCC	2 cut(s)	23, 76
ClaI	ATCGAT	1 cut(s)	513
CseI	GACGC	2 cut(s)	242, 382
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	32
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	363, 407, 414
DpnI	GATC	3 cut(s)	101, 494, 516
DpnII	GATC	3 cut(s)	99, 492, 514
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	92, 110, 459
EarI	CTCTTC	3 cut(s)	92, 110, 459
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	23
Eco47III	AGCGCT	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 317, 319, 453
FatI	CATG	1 cut(s)	31
FauI	CCCGC	1 cut(s)	435
Fnu4HI	GCNGC	7 cut(s)	79, 160, 221, 226, 237, 301, 370
Fsp4HI	GCNGC	7 cut(s)	79, 160, 221, 226, 237, 301, 370
GlaI	GCGC	4 cut(s)	198, 224, 412, 474
GluI	GCNGC	7 cut(s)	79, 160, 221, 226, 237, 301, 370
HaeII	RGCGCY	2 cut(s)	414, 476
HaeIII	GGCC	3 cut(s)	36, 78, 228
HapII	CCGG	2 cut(s)	279, 532
HgaI	GACGC	2 cut(s)	242, 382
HhaI	GCGC	4 cut(s)	199, 225, 413, 475
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	4 cut(s)	197, 223, 411, 473
HinP1I	GCGC	4 cut(s)	197, 223, 411, 473
HinfI	GANTC	2 cut(s)	14, 244
HpaII	CCGG	2 cut(s)	279, 532
HphI	GGTGA	4 cut(s)	100, 118, 171, 317
Hpy188I	TCNGA	3 cut(s)	289, 326, 388
Hpy188III	TCNNGA	2 cut(s)	21, 97
Hpy99I	CGWCG	7 cut(s)	56, 98, 116, 214, 236, 398, 522
HpyAV	CCTTC	3 cut(s)	37, 340, 517
HpyCH4III	ACNGT	3 cut(s)	46, 112, 130
HpyCH4IV	ACGT	2 cut(s)	401, 520
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 205, 220, 375, 432
HpyF3I	CTNAG	3 cut(s)	363, 407, 414
HpySE526I	ACGT	2 cut(s)	401, 520
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	4 cut(s)	197, 223, 411, 473
Kzo9I	GATC	3 cut(s)	99, 492, 514
LpnPI	CCDG	9 cut(s)	6, 254, 282, 284, 292, 422, 433, 449, 545
Lsp1109I	GCAGC	2 cut(s)	223, 287
MaeII	ACGT	2 cut(s)	401, 520
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	3 cut(s)	101, 494, 516
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	3 cut(s)	99, 492, 514
MboII	GAAGA	9 cut(s)	9, 79, 82, 97, 124, 347, 452, 455, 476
MflI	RGATCY	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	2 cut(s)	283, 535
MluNI	TGGCCA	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	2 cut(s)	279, 532
MspR9I	CCNGG	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	4 cut(s)	146, 197, 223, 225
MwoI	GCNNNNNNNGC	5 cut(s)	165, 205, 220, 375, 432
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	99, 492, 514
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	5 cut(s)	120, 201, 330, 339, 510
PfeI	GAWTC	2 cut(s)	14, 244
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	7 cut(s)	80, 161, 222, 227, 238, 302, 371
Ple19I	CGATCG	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	23, 76
PsuI	RGATCY	1 cut(s)	492
PsyI	GACNNNGTC	1 cut(s)	392
PvuI	CGATCG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	7 cut(s)	79, 160, 221, 226, 237, 301, 370
Sau3AI	GATC	3 cut(s)	99, 492, 514
Sau96I	GGNCC	2 cut(s)	23, 76
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	7 cut(s)	184, 351, 357, 404, 462, 523, 529
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	283, 535
SsiI	CCGC	8 cut(s)	79, 160, 166, 221, 225, 303, 370, 428
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	46, 112, 130
TaiI	ACGT	2 cut(s)	404, 523
TaqI	TCGA	7 cut(s)	51, 231, 247, 333, 396, 513, 517
TasI	AATT	2 cut(s)	283, 535
TauI	GCSGC	5 cut(s)	81, 162, 223, 228, 372
TfiI	GAWTC	2 cut(s)	14, 244
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	236, 300
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	371
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.