Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018730

Physical Location & Seq

Genomic Coordinates Forward (+)

7449550 .. 7450038

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCGACTAAAGATTCTTCTGGACCCTTCCATGGCCACTACACCGTCCTCGACGACAAAGAGTTCCAAGTAAAGGGCCGCACCCTCTTCTTCGTCGTGATCCTCTTCACCGTCGTCGTCCTCGTCACCGTCTTCTTGCTCTACGCGAGATGGGTTTGCCGCTACAGCCCCTCCAACTCACCTTCCTCTTCACACGGGCCGAACGCGCCGCAGCAGAAGCCGCGCGGCCTCGACGCTGCCCTGATTCGAGGCTTGCCGATAATCTTGTACCAGTCCTCCGGCAATTCGGAGGCGGCTGGCTGCGGTGAGTGTTCTATATGTCTCGGAGTTTTCGAAGACGGCGAGAAGGTTAAGGTTCTTCCTCAGTGCCGCCATTGCTACCACTCTGACTGCGTCGATACATGGCTGAGCGCTCAGTCCAGTTGCCCGCTCTGCCGTACTTCTCTCCGGTCAACCTCCGATGACGCTCTGCAAATTGTCGTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

162

Amino Acids

17.75

Weight (kDa)

6.92

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	103 - 146	1.7e-14	Ring finger domain
zf-RING_11	PF17123	103 - 132	1.9e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	103 - 145	3.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	104 - 145	7.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	112 - 146	2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018730)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24750
rosa_chinensis	RchiOBHm_Chr1g0370601
rosa_laevigata	RLG00000027024
rosa_multiflora	Rmu_sc0002021.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286400
rosa_rugosa	Rorug01G0358000
rosa_samantha	Rh1BG330700 Rh1DG362200
rosa_wichuraiana	Rw1G032330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	4 cut(s)	146, 206, 223, 225
AciI	CCGC	9 cut(s)	79, 160, 209, 221, 225, 293, 303, 370, 428
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	34
AfaI	GTAC	3 cut(s)	269, 439, 483
AfeI	AGCGCT	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	32, 73
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	412
AoxI	GGCC	4 cut(s)	34, 76, 197, 226
ApeKI	GCWGC	3 cut(s)	211, 236, 300
AspLEI	GCGC	3 cut(s)	208, 225, 413
AspS9I	GGNCC	3 cut(s)	23, 76, 197
AsuHPI	GGTGA	4 cut(s)	100, 118, 171, 317
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	124, 342
BbvI	GCAGC	3 cut(s)	223, 223, 287
BccI	CCATC	1 cut(s)	144
BceAI	ACGGC	2 cut(s)	355, 420
BcoDI	GTCTC	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	414
BlpI	GCTNAGC	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	3 cut(s)	23, 76, 197
BmiI	GGNNCC	1 cut(s)	25
BpiI	GAAGAC	2 cut(s)	124, 342
Bpu1102I	GCTNAGC	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 73
Bse1I	ACTGG	2 cut(s)	271, 420
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	32, 73
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	3 cut(s)	377, 398, 428
BseNI	ACTGG	2 cut(s)	271, 420
BseXI	GCAGC	3 cut(s)	223, 223, 287
Bsh1236I	CGCG	4 cut(s)	146, 206, 223, 225
BshFI	GGCC	4 cut(s)	36, 78, 199, 228
BsiSI	CCGG	2 cut(s)	279, 448
BslI	CCNNNNNNNGG	2 cut(s)	32, 73
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	36, 78, 199, 228
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	99
Bsp1720I	GCTNAGC	1 cut(s)	407
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	9 cut(s)	79, 160, 209, 221, 225, 293, 303, 370, 428
BspANI	GGCC	4 cut(s)	36, 78, 199, 228
BspCNI	CTCAG	3 cut(s)	376, 399, 427
BspFNI	CGCG	4 cut(s)	146, 206, 223, 225
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	271, 420
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	4 cut(s)	46, 112, 130, 486
Bst6I	CTCTTC	3 cut(s)	92, 110, 193
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	254, 298, 428
BstDEI	CTNAG	3 cut(s)	363, 407, 414
BstDSI	CCRYGG	1 cut(s)	31
BstFNI	CGCG	4 cut(s)	146, 206, 223, 225
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	3 cut(s)	208, 225, 413
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	6 cut(s)	165, 205, 217, 220, 375, 432
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	4 cut(s)	146, 206, 223, 225
BstV1I	GCAGC	3 cut(s)	223, 223, 287
BstV2I	GAAGAC	2 cut(s)	124, 342
BsuRI	GGCC	4 cut(s)	36, 78, 199, 228
BtgI	CCRYGG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	3 cut(s)	254, 298, 428
CfoI	GCGC	3 cut(s)	208, 225, 413
Cfr13I	GGNCC	3 cut(s)	23, 76, 197
CseI	GACGC	3 cut(s)	242, 382, 473
Csp6I	GTAC	3 cut(s)	268, 438, 482
CviAII	CATG	2 cut(s)	32, 402
CviQI	GTAC	3 cut(s)	268, 438, 482
DdeI	CTNAG	3 cut(s)	363, 407, 414
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	92, 110, 193
EarI	CTCTTC	3 cut(s)	92, 110, 193
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	23
Eco47III	AGCGCT	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	35, 405
FaiI	YATR	4 cut(s)	33, 317, 319, 403
FatI	CATG	2 cut(s)	31, 401
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	5
GlaI	GCGC	3 cut(s)	207, 224, 412
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	36, 78, 199, 228
HapII	CCGG	2 cut(s)	279, 448
HgaI	GACGC	3 cut(s)	242, 382, 473
HhaI	GCGC	3 cut(s)	208, 225, 413
Hin1II	CATG	2 cut(s)	35, 405
Hin6I	GCGC	3 cut(s)	206, 223, 411
HinP1I	GCGC	3 cut(s)	206, 223, 411
HincII	GTYRAC	2 cut(s)	6, 453
HindII	GTYRAC	2 cut(s)	6, 453
HinfI	GANTC	2 cut(s)	14, 244
HpaII	CCGG	2 cut(s)	279, 448
HphI	GGTGA	4 cut(s)	100, 118, 171, 317
Hpy166II	GTNNAC	2 cut(s)	6, 453
Hpy188I	TCNGA	4 cut(s)	289, 326, 388, 460
Hpy188III	TCNNGA	2 cut(s)	21, 97
Hpy8I	GTNNAC	2 cut(s)	6, 453
Hpy99I	CGWCG	6 cut(s)	56, 98, 116, 119, 236, 398
HpyAV	CCTTC	3 cut(s)	37, 192, 340
HpyCH4III	ACNGT	4 cut(s)	46, 112, 130, 486
HpyCH4V	TGCA	1 cut(s)	472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	165, 205, 217, 220, 375, 432
HpyF3I	CTNAG	3 cut(s)	363, 407, 414
Hsp92II	CATG	2 cut(s)	35, 405
HspAI	GCGC	3 cut(s)	206, 223, 411
Kzo9I	GATC	1 cut(s)	99
LpnPI	CCDG	7 cut(s)	6, 254, 282, 284, 292, 433, 461
Lsp1109I	GCAGC	3 cut(s)	223, 223, 287
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	101
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	1 cut(s)	99
MboII	GAAGA	8 cut(s)	9, 79, 82, 97, 124, 180, 347, 350
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	2 cut(s)	283, 474
MluNI	TGGCCA	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	2 cut(s)	279, 448
MvnI	CGCG	4 cut(s)	146, 206, 223, 225
MwoI	GCNNNNNNNGC	6 cut(s)	165, 205, 217, 220, 375, 432
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	35, 405
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 330, 339
PfeI	GAWTC	2 cut(s)	14, 244
PflFI	GACNNNGTC	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	3 cut(s)	23, 76, 197
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	3 cut(s)	269, 439, 483
RsaNI	GTAC	3 cut(s)	268, 438, 482
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	3 cut(s)	23, 76, 197
SetI	ASST	4 cut(s)	184, 351, 357, 458
SfcI	CTRYAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	283, 474
SsiI	CCGC	9 cut(s)	79, 160, 209, 221, 225, 293, 303, 370, 428
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	4 cut(s)	46, 112, 130, 486
TaqI	TCGA	6 cut(s)	5, 51, 231, 247, 333, 396
TasI	AATT	2 cut(s)	283, 474
TauI	GCSGC	7 cut(s)	81, 162, 211, 223, 228, 296, 372
TfiI	GAWTC	2 cut(s)	14, 244
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	211, 236, 300
Tsp45I	GTSAC	1 cut(s)	124
TspRI	CASTG	1 cut(s)	371
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.