Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017284

Physical Location & Seq

Genomic Coordinates Forward (+)

7880249 .. 7882634

Gene Structure 2386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAATCGTACGGTCGGTGAGTCCTCCTCCGCCCTCGCATCACCGTCCACCTCACACTCAATTCGCGCCTCACCATCGTCGTTGTCCGAAACGTTTCAGAAACCGAAACCAAACGCCATTCTTGTTTTTCTTCCCTCCTTTCAAATCAGACCAAGAACAAGAAACAGTAGCTGCATCATCATCACTATGTTGGCTAAACTCTTCAAAAGACCCTCACAAAAACAACATCATCCTCAGGCAAGGGTGTCACAAGCTGATTTGGATCCAAGAATTGTTTTTCACTATGGGATTCCATCTACTGCATCAATTCTAGCACTTGATCGCACGCAAAGCTTGTTGGCAATTGGAACCCTAAAAGCTAACGAGTATGTCCGGCGGTATTGTCCAAAAGACAGGAGCTTTTTAACTTTGTTCTTAGAAAATCAAGGTTTTTTAGCCAGTGTCTCAAGTGAAAATGATATTCAGGCAAGGGTGTCACAAGCTGATTTGGATCCAAGAATAGTTTTTCACTATGGGATTCCATCTACTGCATTGATTCTCGCACTTGATCGCACGCAGAGCTTGCTGGCAATTGGAACCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

195

Amino Acids

21.43

Weight (kDa)

10.08

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017284)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370
pyrus_communis	pycom12g10530 pycom12g16180
rosa_chinensis	RchiOBHm_Chr6g0296391
rosa_laevigata	RLG00000027043
rosa_multiflora	Rmu_co8421439.1_g000001 Rmu_sc0011275.1_g000003
rosa_samantha	Rh2BG113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	30, 376
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	4 cut(s)	257, 270, 485, 498
AfaI	GTAC	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	143, 205
AluBI	AGCT	7 cut(s)	171, 254, 333, 359, 399, 482, 561
AluI	AGCT	7 cut(s)	171, 254, 333, 359, 399, 482, 561
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	4 cut(s)	257, 270, 485, 498
AlwNI	CAGNNNCTG	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	29, 33, 63
AxyI	CCTNAGG	1 cut(s)	234
BamHI	GGATCC	2 cut(s)	262, 490
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	3 cut(s)	82, 301, 529
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
BmiI	GGNNCC	4 cut(s)	264, 349, 492, 577
BmsI	GCATC	3 cut(s)	47, 183, 311
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuEI	CTTGAG	1 cut(s)	430
BsaBI	GATNNNNATC	2 cut(s)	261, 489
Bse1I	ACTGG	1 cut(s)	438
Bse21I	CCTNAGG	1 cut(s)	234
Bse8I	GATNNNNATC	2 cut(s)	261, 489
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	2 cut(s)	261, 489
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	373
BsiWI	CGTACG	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	262, 319, 490, 547
BspACI	CCGC	2 cut(s)	30, 376
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	4 cut(s)	264, 349, 492, 577
BspPI	GGATC	4 cut(s)	257, 270, 485, 498
BsrI	ACTGG	1 cut(s)	438
BssMI	GATC	4 cut(s)	262, 319, 490, 547
Bst4CI	ACNGT	3 cut(s)	13, 45, 167
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	562
BstC8I	GCNNGC	4 cut(s)	326, 554, 563, 567
BstDEI	CTNAG	2 cut(s)	234, 415
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	4 cut(s)	265, 322, 493, 550
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	4 cut(s)	262, 319, 490, 547
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 558, 562
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	262, 490
BstYI	RGATCY	2 cut(s)	262, 490
Bsu36I	CCTNAGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	4 cut(s)	326, 554, 563, 567
CaiI	CAGNNNCTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	9
CviJI	RGCY	9 cut(s)	171, 194, 254, 333, 359, 399, 437, 482, 561
CviKI_1	RGCY	9 cut(s)	171, 194, 254, 333, 359, 399, 437, 482, 561
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	234, 415
DpnI	GATC	4 cut(s)	264, 321, 492, 549
DpnII	GATC	4 cut(s)	262, 319, 490, 547
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	234
FaiI	YATR	4 cut(s)	188, 285, 369, 513
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	172
HapII	CCGG	1 cut(s)	373
HhaI	GCGC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	5 cut(s)	4, 20, 289, 517, 535
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	3 cut(s)	29, 33, 63
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	88, 99, 149
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	3 cut(s)	13, 45, 167
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	174, 302, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 558, 562
HpyF3I	CTNAG	2 cut(s)	234, 415
HpySE526I	ACGT	1 cut(s)	92
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	262, 319, 490, 547
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	6 cut(s)	221, 379, 386, 449, 451, 551
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	3 cut(s)	47, 183, 311
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	246, 474
MalI	GATC	4 cut(s)	264, 321, 492, 549
MboI	GATC	4 cut(s)	262, 319, 490, 547
MboII	GAAGA	2 cut(s)	122, 193
MfeI	CAATTG	2 cut(s)	342, 570
MflI	RGATCY	2 cut(s)	262, 490
MluCI	AATT	5 cut(s)	60, 270, 306, 342, 570
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	8 cut(s)	34, 37, 44, 61, 79, 145, 223, 243
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	1 cut(s)	373
MunI	CAATTG	2 cut(s)	342, 570
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	330, 558, 562
NdeII	GATC	4 cut(s)	262, 319, 490, 547
NlaIV	GGNNCC	4 cut(s)	264, 349, 492, 577
NmuCI	GTSAC	2 cut(s)	246, 474
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	4 cut(s)	4, 289, 517, 535
Pfl23II	CGTACG	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp1406I	AACGTT	1 cut(s)	92
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	4 cut(s)	264, 349, 492, 577
PstNI	CAGNNNCTG	1 cut(s)	171
PsuI	RGATCY	2 cut(s)	262, 490
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	4 cut(s)	262, 319, 490, 547
SchI	GAGTC	1 cut(s)	29
SfaNI	GCATC	3 cut(s)	47, 183, 311
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	5 cut(s)	60, 270, 306, 342, 570
SsiI	CCGC	2 cut(s)	30, 376
SspMI	CTAG	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	13, 45, 167
TaiI	ACGT	1 cut(s)	95
TasI	AATT	5 cut(s)	60, 270, 306, 342, 570
TfiI	GAWTC	4 cut(s)	4, 289, 517, 535
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	2 cut(s)	246, 474
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	2 cut(s)	246, 474
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.