Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017284

Physical Location & Seq

Genomic Coordinates Forward (+)

9649771 .. 9652559

Gene Structure 2789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG113800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTTGTGAGAAAGCTTGTGGAGAAGGCTTCCAAGAAGCCTGGAGGAAGTTCTGATGGTCTAAAAGGTGGTGATATAGACCCGCGTGTAGTATTCCACAATGGAGTACCATCAGGATCTAACACTTTGGCTTATGACTCCATCCAAAAAATACTTGCAGTTTCCACTAAGGATGGCCGGATTAAGTTATTTGGTAAAGATAATACTCAAGCGCTACTTGAGTCTATTAATGCAGTACCAAGCAAGTTCTTACAGTTTGTGGAGAATCAAGGTATACTTCTAAATGTAAATTCCAAGAACCACATTGAGGTTTGGGACTTGGAACAGAACCTATTGGCTCATGTACATGCTTTTCATGAAGATATTACCTCCTTCACAGTCATGCAACAGAGTCTCTACATGTATGTTGGAGATTCTGTTGGGAATGTTTCAGTTCTGAAGCTTGAGCAAGAATCATGTCATATATTACAAATGAAATACACTATACCTTATTCAGCTTCTCATGGGAATTCAACTGAAGTTGCAGGCGACACTGCGGTGATGCACATAATGCCTCAGCCAACAGCTGAAAGTAGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

193

Amino Acids

21.24

Weight (kDa)

6.44

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017284)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370
pyrus_communis	pycom12g10530 pycom12g16180
rosa_chinensis	RchiOBHm_Chr6g0296391
rosa_laevigata	RLG00000027043
rosa_multiflora	Rmu_co8421439.1_g000001 Rmu_sc0011275.1_g000003
rosa_samantha	Rh2BG113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	274
AccII	CGCG	1 cut(s)	85
AciI	CCGC	2 cut(s)	83, 536
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	289, 508
AcuI	CTGAAG	2 cut(s)	458, 537
AfaI	GTAC	3 cut(s)	108, 237, 345
AfeI	AGCGCT	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	513
AjnI	CCWGG	1 cut(s)	40
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	4 cut(s)	16, 442, 497, 566
AluI	AGCT	4 cut(s)	16, 442, 497, 566
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	124
Aor51HI	AGCGCT	1 cut(s)	213
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	2 cut(s)	289, 508
AseI	ATTAAT	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	83, 550
BbvCI	CCTCAGC	1 cut(s)	555
BccI	CCATC	4 cut(s)	50, 118, 149, 167
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	398
BfoI	RGCGCY	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	3 cut(s)	192, 239, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	141, 178
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	116
BspACI	CCGC	2 cut(s)	83, 536
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	355
BspPI	GGATC	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	343
BssMI	GATC	1 cut(s)	116
BssNAI	GTATAC	1 cut(s)	275
Bst1107I	GTATAC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	255, 379
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstAUI	TGTACA	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	168, 555
BstF5I	GGATG	2 cut(s)	141, 178
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	2 cut(s)	350, 403
BstSCI	CCNGG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BstZ17I	GTATAC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	141, 178
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	526
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	107, 236, 344
CviAII	CATG	7 cut(s)	341, 347, 356, 382, 400, 456, 503
CviQI	GTAC	3 cut(s)	107, 236, 344
DdeI	CTNAG	2 cut(s)	168, 555
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	175
Eco47III	AGCGCT	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	458, 537
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	7 cut(s)	344, 350, 359, 385, 403, 459, 506
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 261, 293
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	7 cut(s)	340, 346, 355, 381, 399, 455, 502
FauI	CCCGC	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	274
FokI	GGATG	2 cut(s)	128, 185
GlaI	GCGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	178
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	7 cut(s)	344, 350, 359, 385, 403, 459, 506
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	2 cut(s)	14, 440
HinfI	GANTC	6 cut(s)	137, 221, 265, 391, 413, 452
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	83, 550
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	55, 438
Hpy188III	TCNNGA	2 cut(s)	114, 356
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	19, 382
HpyCH4III	ACNGT	2 cut(s)	255, 379
HpyCH4V	TGCA	5 cut(s)	158, 233, 385, 524, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	2 cut(s)	168, 555
Hsp92II	CATG	7 cut(s)	344, 350, 359, 385, 403, 459, 506
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	27, 54, 99, 191, 510
LweI	GCATC	1 cut(s)	531
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	371
MflI	RGATCY	1 cut(s)	116
MluCI	AATT	2 cut(s)	289, 508
MlyI	GAGTC	3 cut(s)	131, 230, 400
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	38, 301, 379, 564, 570
MseI	TTAA	2 cut(s)	183, 228
MslI	CAYNNNNRTG	3 cut(s)	345, 380, 536
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	550
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	7 cut(s)	344, 350, 359, 385, 403, 459, 506
NspI	RCATGY	2 cut(s)	350, 403
OliI	CACNNNNGTG	1 cut(s)	536
PagI	TCATGA	1 cut(s)	355
PciI	ACATGT	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	265, 413, 452
PleI	GAGTC	3 cut(s)	131, 229, 399
PpsI	GAGTC	3 cut(s)	131, 229, 399
PscI	ACATGT	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	108, 237, 345
RsaNI	GTAC	3 cut(s)	107, 236, 344
RseI	CAYNNNNRTG	3 cut(s)	345, 380, 536
SaqAI	TTAA	2 cut(s)	183, 228
Sau3AI	GATC	1 cut(s)	116
SchI	GAGTC	3 cut(s)	131, 230, 400
ScrFI	CCNGG	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	531
SmiMI	CAYNNNNRTG	3 cut(s)	345, 380, 536
SmlI	CTYRAG	3 cut(s)	207, 218, 443
SmoI	CTYRAG	3 cut(s)	207, 218, 443
Sse9I	AATT	2 cut(s)	289, 508
SsiI	CCGC	2 cut(s)	83, 536
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	255, 379
TasI	AATT	2 cut(s)	289, 508
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	265, 413, 452
Tru1I	TTAA	2 cut(s)	183, 228
Tru9I	TTAA	2 cut(s)	183, 228
TscAI	CASTG	1 cut(s)	538
TspDTI	ATGAA	3 cut(s)	344, 372, 488
TspRI	CASTG	1 cut(s)	538
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	2 cut(s)	289, 508
XceI	RCATGY	2 cut(s)	350, 403
XmiI	GTMKAC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.