Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421439.1

Orthogroup ID

OG0017284

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1207

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

cctggaggaagttctgatggtctaaaaggtagtgatatagacccgcgtgtagtattccacaatggagtaccgtcaggatctaacactttggcttatgactccatccaaaaaatacttgcagtttccactaaggatggccggattaagttatttggtaaagataatactcaagcgctacttgagtctatcaatgcagtaccaagcaagttcttacagtttgtggagaatcaaggtatacttctaaatgtaaattccaagaaccacattgaggtttgggacttggaacagaacctattggctcatgtacatgcttttcatgaagatattacctccttcacggtcatgcaaaagagtctctacatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

121

Amino Acids

13.31

Weight (kDa)

5.9

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017284)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370 FvH4_4g08370
pyrus_communis	pycom12g10530 pycom12g16180
rosa_chinensis	RchiOBHm_Chr6g0296391
rosa_laevigata	RLG00000027043
rosa_multiflora	Rmu_co8421439.1_g000001 Rmu_sc0011275.1_g000003
rosa_samantha	Rh2BG113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	235
AccII	CGCG	1 cut(s)	46
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	250
AfaI	GTAC	3 cut(s)	69, 198, 306
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	85
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	175
BccI	CCATC	3 cut(s)	11, 110, 128
BciT130I	CCWGG	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	3
BmrFI	CCNGG	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	153, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	3
BseGI	GGATG	2 cut(s)	102, 139
BseLI	CCNNNNNNNGG	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	316
BspPI	GGATC	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	304
BssMI	GATC	1 cut(s)	77
BssNAI	GTATAC	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	3
Bst4CI	ACNGT	3 cut(s)	72, 216, 340
BstAUI	TGTACA	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	102, 139
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	3
BstNSI	RCATGY	2 cut(s)	311, 364
BstUI	CGCG	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BstZ17I	GTATAC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	102, 139
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	68, 197, 305
CviAII	CATG	5 cut(s)	302, 308, 317, 343, 361
CviJI	RGCY	3 cut(s)	92, 138, 299
CviKI_1	RGCY	3 cut(s)	92, 138, 299
CviQI	GTAC	3 cut(s)	68, 197, 305
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	174
FaeI	CATG	5 cut(s)	305, 311, 320, 346, 364
FaiI	YATR	8 cut(s)	38, 96, 236, 303, 309, 318, 344, 362
FalI	AAGNNNNNCTT	4 cut(s)	162, 194, 222, 254
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	5 cut(s)	301, 307, 316, 342, 360
FauI	CCCGC	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	235
FokI	GGATG	2 cut(s)	89, 146
GlaI	GCGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	305, 311, 320, 346, 364
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	4 cut(s)	98, 182, 226, 352
HpaII	CCGG	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	75, 317
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	3 cut(s)	72, 216, 340
HpyCH4V	TGCA	3 cut(s)	119, 194, 346
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	305, 311, 320, 346, 364
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	77
LpnPI	CCDG	3 cut(s)	15, 60, 152
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MboII	GAAGA	1 cut(s)	332
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	1 cut(s)	250
MlyI	GAGTC	3 cut(s)	92, 191, 361
MnlI	CCTC	2 cut(s)	262, 340
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	306, 341
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	3
MvaI	CCWGG	1 cut(s)	3
MvnI	CGCG	1 cut(s)	46
NdeII	GATC	1 cut(s)	77
NlaIII	CATG	5 cut(s)	305, 311, 320, 346, 364
NspI	RCATGY	2 cut(s)	311, 364
PagI	TCATGA	1 cut(s)	316
PciI	ACATGT	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	226
PleI	GAGTC	3 cut(s)	92, 190, 360
PpsI	GAGTC	3 cut(s)	92, 190, 360
PscI	ACATGT	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	3 cut(s)	69, 198, 306
RsaNI	GTAC	3 cut(s)	68, 197, 305
RseI	CAYNNNNRTG	2 cut(s)	306, 341
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	77
SchI	GAGTC	3 cut(s)	92, 191, 361
ScrFI	CCNGG	1 cut(s)	3
SetI	ASST	5 cut(s)	31, 235, 273, 294, 332
SmiMI	CAYNNNNRTG	2 cut(s)	306, 341
SmlI	CTYRAG	2 cut(s)	168, 179
SmoI	CTYRAG	2 cut(s)	168, 179
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	72, 216, 340
TasI	AATT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	305, 333
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	2 cut(s)	311, 364
XmiI	GTMKAC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.