RLG00000027185

Protease inhibitor seed storage lipid transfer family protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
9355340 .. 9355801
462 bp
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UTR
Exon/CDS
Intron
RLM00000027185

Sequence Viewer

Length: 357 bp
ATGGAAGCTGCAATGAAGAACATTTGCCTTGTAGCTTTTCTTGTGATTCTGGTTGTCGCTCAGTTCAACGGGGCTTATGGGGCTGGTGAATGTGGAAAATCCAACCCAGACACTGAGGCTTGGAAGCTGGCTCCGTGTGCAGCAGCAGCACAAGATGCGAATGCTGCAGTTTCTGCTAAGTGCTGCAGTCAGGTAAAGAGCATAGGTCAGAACCCAAGCTGCCTCTGTGCCGTGATGCTTTCTAATACTGCTAAGACTTCAGGAGTGAAACCAGAAGTTGCTGTTACTATTCCTAAACGTTGTAACATTCCTGATCGTCCTGTTGGCTACAAGTGTGGAGGTTATACATTACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

12.15

Weight (kDa)

8.6

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 30 - 108 6.7e-11 Probable lipid transfer
Tryp_alpha_amyl PF00234 42 - 112 1.3e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 243
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 4 cut(s) 8, 35, 127, 219
AluI AGCT 4 cut(s) 8, 35, 127, 219
AlwNI CAGNNNCTG 2 cut(s) 113, 173
ApeKI GCWGC 7 cut(s) 8, 140, 143, 146, 164, 183, 219
AsuHPI GGTGA 1 cut(s) 98
BbvI GCAGC 6 cut(s) 151, 152, 155, 158, 170, 206
BceAI ACGGC 1 cut(s) 215
BfmI CTRYAG 2 cut(s) 165, 184
BisI GCNGC 7 cut(s) 9, 141, 144, 147, 165, 184, 220
BlsI GCNGC 7 cut(s) 10, 142, 145, 148, 166, 185, 221
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 2 cut(s) 145, 225
Bse3DI GCAATG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 74, 105
BseXI GCAGC 6 cut(s) 151, 152, 155, 158, 170, 206
BsgI GTGCAG 1 cut(s) 159
BsmI GAATGC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 313
BspCNI CTCAG 2 cut(s) 73, 106
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 2 cut(s) 169, 188
BsrDI GCAATG 1 cut(s) 18
BssMI GATC 1 cut(s) 313
BstAPI GCANNNNNTGC 2 cut(s) 155, 173
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 4 cut(s) 60, 114, 177, 252
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 6 cut(s) 80, 137, 146, 155, 164, 173
BstSFI CTRYAG 2 cut(s) 165, 184
BstV1I GCAGC 6 cut(s) 151, 152, 155, 158, 170, 206
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 2 cut(s) 113, 173
CviJI RGCY 9 cut(s) 8, 35, 74, 83, 119, 127, 131, 219, 327
CviKI_1 RGCY 9 cut(s) 8, 35, 74, 83, 119, 127, 131, 219, 327
DdeI CTNAG 4 cut(s) 60, 114, 177, 252
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 243
FaiI YATR 3 cut(s) 78, 203, 345
Fnu4HI GCNGC 7 cut(s) 9, 141, 144, 147, 165, 184, 220
Fsp4HI GCNGC 7 cut(s) 9, 141, 144, 147, 165, 184, 220
GluI GCNGC 7 cut(s) 9, 141, 144, 147, 165, 184, 220
HinfI GANTC 1 cut(s) 46
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 261, 311
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 11, 140, 167, 186
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 137, 146, 155, 164, 173
HpyF3I CTNAG 4 cut(s) 60, 114, 177, 252
HpySE526I ACGT 1 cut(s) 298
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 9 cut(s) 35, 69, 113, 120, 176, 246, 285, 324, 333
Lsp1109I GCAGC 6 cut(s) 151, 152, 155, 158, 170, 206
LweI GCATC 2 cut(s) 145, 225
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 283, 302
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 3 cut(s) 109, 233, 332
Mva1269I GAATGC 1 cut(s) 166
MwoI GCNNNNNNNGC 6 cut(s) 80, 137, 146, 155, 164, 173
NdeII GATC 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 132
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 7 cut(s) 10, 142, 145, 148, 166, 185, 221
Psp1406I AACGTT 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 132
PstI CTGCAG 2 cut(s) 169, 188
PstNI CAGNNNCTG 2 cut(s) 113, 173
SatI GCNGC 7 cut(s) 9, 141, 144, 147, 165, 184, 220
Sau3AI GATC 1 cut(s) 313
SetI ASST 8 cut(s) 10, 37, 129, 195, 208, 221, 301, 343
SfaNI GCATC 2 cut(s) 145, 225
SfcI CTRYAG 2 cut(s) 165, 184
TaiI ACGT 1 cut(s) 301
TfiI GAWTC 1 cut(s) 46
TscAI CASTG 1 cut(s) 118
TseI GCWGC 7 cut(s) 8, 140, 143, 146, 164, 183, 219
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.