Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0020701

Physical Location & Seq

Genomic Coordinates Reverse (-)

13632796 .. 13634243

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027656

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCCATCAATAGTTGCAGAGTTTTGCGTTGGTGTTCAGTTCCCTGTGATTTTTGCAATTACTTCTGAAATCTTTGGGCTAAAGCACTATGCTACTTTGAATAATGTTGGGCTCATGGCTAGCCCACTTGGTTCATCTTCGCCTAATGTGAGGGTTACAGGGTTTCTGTATGATAAGGAATCAGAGAAGCAACTGAAAGCTTTGGGATTGGAAAGGAAGAGTGGTAATGGATTACGTTGTAGTCTGCTACAAAACTGTCCTGCATTACCATTACTGCAGTCACATGCATACTCGCATTGCTTGGTCTGGGAGGAGTTCACACTTTGTGAGAGTCTGAAGGAGTTTGAATCTCATCGACCCAAACTTTGGTACGTCACGCCCACCTCCATTGCCGCCTTCAGCTTCGCTCCCCCGGTGATCACCTCGAGTCCGGTAAGGGGTTTTGATTGTGATTTTGATTTCATGGGTTTGATTTCATTTCCTCTGTCCCGAAAACCTGAAATTTTGGGTGGATTGGATTCCATAAAATGTTGGGTTTTGTTTTCTGATGAGAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

187

Amino Acids

20.64

Weight (kDa)

6.08

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020701)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027656
rosa_multiflora	Rmu_sc0007125.1_g000011 Rmu_ssc0000009.1_g000026
rosa_roxburghii	Rroxscaffold_1G00039810 Rroxscaffold_3G00240160 Rroxscaffold_4G00331750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	366
AciI	CCGC	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	2 cut(s)	356, 382
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	366, 437
AgsI	TTSAA	2 cut(s)	100, 347
AluBI	AGCT	2 cut(s)	200, 402
AluI	AGCT	2 cut(s)	200, 402
Ama87I	CYCGRG	1 cut(s)	424
ApoI	RAATTY	1 cut(s)	501
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	412, 427
AsuNHI	GCTAGC	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	114
BccI	CCATC	1 cut(s)	13
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	413
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	413
BmtI	GCTAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 437
Bse3DI	GCAATG	2 cut(s)	295, 387
BseDI	CCNNGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	366, 437
BseMI	GCAATG	2 cut(s)	295, 387
BseRI	GAGGAG	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	413, 431
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	366, 437
BsmFI	GGGAC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	1 cut(s)	393
BspMAI	CTGCAG	1 cut(s)	279
BspOI	GCTAGC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	295, 387
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	3 cut(s)	115, 284, 463
CviJI	RGCY	6 cut(s)	79, 112, 119, 123, 200, 402
CviKI_1	RGCY	6 cut(s)	79, 112, 119, 123, 200, 402
CviQI	GTAC	1 cut(s)	370
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
DraIII	CACNNNGTG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	356, 382
Eco88I	CYCGRG	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	3 cut(s)	118, 287, 466
FaiI	YATR	7 cut(s)	90, 116, 171, 285, 289, 464, 524
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	3 cut(s)	114, 283, 462
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	393
HapII	CCGG	2 cut(s)	413, 431
Hin1II	CATG	3 cut(s)	118, 287, 466
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	5 cut(s)	179, 331, 347, 427, 518
HpaII	CCGG	2 cut(s)	413, 431
HphI	GGTGA	2 cut(s)	412, 427
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	4 cut(s)	67, 184, 336, 547
Hpy188III	TCNNGA	1 cut(s)	489
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	331, 406
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	235, 372
HpyCH4V	TGCA	5 cut(s)	17, 56, 263, 277, 287
HpySE526I	ACGT	2 cut(s)	235, 372
Hsp92II	CATG	3 cut(s)	118, 287, 466
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	7 cut(s)	57, 144, 273, 292, 426, 444, 510
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	2 cut(s)	235, 372
MaeIII	GTNAC	3 cut(s)	154, 279, 373
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	2 cut(s)	129, 229
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	57, 501
MlyI	GAGTC	2 cut(s)	340, 436
MnlI	CCTC	5 cut(s)	144, 304, 394, 433, 492
Mph1103I	ATGCAT	1 cut(s)	289
MspI	CCGG	2 cut(s)	413, 431
MspR9I	CCNGG	1 cut(s)	413
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	1 cut(s)	417
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	3 cut(s)	118, 287, 466
NmuCI	GTSAC	2 cut(s)	279, 373
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	179, 347, 518
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	2 cut(s)	339, 435
PpsI	GAGTC	2 cut(s)	339, 435
PspXI	VCTCGAGB	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	279
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	1 cut(s)	417
SchI	GAGTC	2 cut(s)	340, 436
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	7 cut(s)	202, 238, 375, 386, 404, 425, 499
SfcI	CTRYAG	1 cut(s)	275
Sfr274I	CTCGAG	1 cut(s)	424
SlaI	CTCGAG	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	2 cut(s)	57, 501
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	238, 375
TaqI	TCGA	2 cut(s)	355, 425
TasI	AATT	2 cut(s)	57, 501
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	3 cut(s)	179, 347, 518
TseFI	GTSAC	2 cut(s)	279, 373
Tsp45I	GTSAC	2 cut(s)	279, 373
TspDTI	ATGAA	3 cut(s)	123, 451, 465
Van91I	CCANNNNNTGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	501
XceI	RCATGY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	424
XspI	CTAG	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.