Rmu_sc0007125.1_g000011

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007125.1
OG0020701
Physical Location & Seq
Reverse (-)
31712 .. 32044
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007125.1_g000011.1.cds

Sequence Viewer

Length: 333 bp
atgcttactctgtttccctcttgctatcatgcattaattggtcaccgtctcattgaattcaatgtcccaaatggtctgtatatgccatcaatagttgcagagtcttgcgttggtgttcagttccctgtgatttttgcaattacttctgaaatctttgggctaaagcactatgctactttgaacaatgttggggtcatggctagcccaaagctttgggattggaaactggaaaggaagagtggtaatggattaagttgtactggcggccggactttgctgcaaaacggtcctgcattaccattactgcagtcacatactcacattgcttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

110

Amino Acids

12.11

Weight (kDa)

8.56

Isoelectric Point (pI)

70.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020701)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027656
rosa_multiflora Rmu_sc0007125.1_g000011 Rmu_ssc0000009.1_g000026
rosa_roxburghii Rroxscaffold_1G00039810 Rroxscaffold_3G00240160 Rroxscaffold_4G00331750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 3 cut(s) 56, 61, 181
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 56
AseI ATTAAT 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 35
AsuNHI GCTAGC 1 cut(s) 200
AvaII GGWCC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 264
BccI CCATC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 2 cut(s) 265, 278
BlsI GCNGC 2 cut(s) 266, 279
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmtI GCTAGC 1 cut(s) 204
Bse1I ACTGG 2 cut(s) 231, 265
Bse3DI GCAATG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 231, 265
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 267
BspACI CCGC 1 cut(s) 264
BspANI GGCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 309
BspOI GCTAGC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 2 cut(s) 231, 265
Bst4CI ACNGT 2 cut(s) 47, 287
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 53
BstMCI CGRYCG 1 cut(s) 268
BstPI GGTNACC 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 213
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 258
CviAII CATG 2 cut(s) 29, 196
CviJI RGCY 5 cut(s) 160, 200, 204, 211, 267
CviKI_1 RGCY 5 cut(s) 160, 200, 204, 211, 267
CviQI GTAC 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 265
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 287
Eco52I CGGCCG 1 cut(s) 265
Eco91I GGTNACC 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 2 cut(s) 32, 199
FaiI YATR 6 cut(s) 30, 81, 83, 171, 197, 315
FaqI GGGAC 1 cut(s) 50
FatI CATG 2 cut(s) 28, 195
Fnu4HI GCNGC 2 cut(s) 265, 278
Fsp4HI GCNGC 2 cut(s) 265, 278
FspBI CTAG 1 cut(s) 201
GluI GCNGC 2 cut(s) 265, 278
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 268
Hin1II CATG 2 cut(s) 32, 199
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 47, 287
HpyCH4V TGCA 6 cut(s) 32, 98, 137, 280, 293, 307
Hsp92II CATG 2 cut(s) 32, 199
LpnPI CCDG 5 cut(s) 138, 212, 246, 281, 303
Lsp1109I GCAGC 1 cut(s) 264
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 41, 309
MboII GAAGA 1 cut(s) 247
MluCI AATT 3 cut(s) 36, 56, 138
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 2 cut(s) 35, 251
MspI CCGG 1 cut(s) 268
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 2 cut(s) 32, 199
NmuCI GTSAC 2 cut(s) 41, 309
NsiI ATGCAT 1 cut(s) 34
PkrI GCNGC 2 cut(s) 266, 279
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 35
PspEI GGTNACC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 309
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 35, 251
SatI GCNGC 2 cut(s) 265, 278
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 110
SetI ASST 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 287
Sse9I AATT 3 cut(s) 36, 56, 138
SsiI CCGC 1 cut(s) 264
SspMI CTAG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 47, 287
TasI AATT 3 cut(s) 36, 56, 138
TatI WGTACW 1 cut(s) 257
TauI GCSGC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 35, 251
Tru9I TTAA 2 cut(s) 35, 251
TseFI GTSAC 2 cut(s) 41, 309
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 2 cut(s) 41, 309
VpaK11BI GGWCC 1 cut(s) 287
VspI ATTAAT 1 cut(s) 35
XapI RAATTY 1 cut(s) 56
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.