Rmu_ssc0000009.1_g000026

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000009.1
OG0020701
Physical Location & Seq
Forward (+)
98109 .. 100054
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000009.1_g000026.1.cds

Sequence Viewer

Length: 531 bp
atggctgctgcccaccaagctgcagagagagtaacatcgaccaaagcttcagttccggatgctaaagatttgtccaccatcattctccatacccaaacagtctgcacagagaggataaaggtacccaaagacataaaaacggccgtcgtggtggtggagaccaccgagcaacacaacgccactggtccggcgacgtccacacacgtcggtggagtgccggttcggcagctatttccagatgtaaatttgggtatgatttcagaaattttgatcacaaagtacaatagcactagaccacgtatgctgactctgtttccctcttggctcttgctatcatgcattggtcaccgtctcattgaattcaatgtcccaaatggtctgtatatgccatcaatagttgcagagttttgcgtgggtgttcagttccctgtgatttttgcaattacttctgaaatctttgggctaaagcactatgctactttgaacaatgttggggtcatggcccacttggttcatcttcgcttaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

176

Amino Acids

19.29

Weight (kDa)

8.51

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020701)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027656
rosa_multiflora Rmu_sc0007125.1_g000011 Rmu_ssc0000009.1_g000026
rosa_roxburghii Rroxscaffold_1G00039810 Rroxscaffold_3G00240160 Rroxscaffold_4G00331750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
Acc65I GGTACC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 121
AccIII TCCGGA 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 3 cut(s) 244, 264, 359
AcuI CTGAAG 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 2 cut(s) 123, 281
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 3 cut(s) 359, 364, 484
AjiI CACGTC 1 cut(s) 205
AleI CACNNNNGTG 1 cut(s) 207
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
AluBI AGCT 3 cut(s) 20, 47, 229
AluI AGCT 3 cut(s) 20, 47, 229
Alw26I GTCTC 2 cut(s) 152, 356
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 2 cut(s) 141, 501
ApeKI GCWGC 4 cut(s) 5, 8, 20, 226
ApoI RAATTY 3 cut(s) 244, 264, 359
Asp718I GGTACC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 185, 502
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 7, 238
BccI CCATC 2 cut(s) 86, 397
BceAI ACGGC 2 cut(s) 128, 156
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 152, 356
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 223
BisI GCNGC 4 cut(s) 6, 9, 21, 227
BlsI GCNGC 4 cut(s) 7, 10, 22, 228
Bme18I GGWCC 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 185, 502
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 55
BseGI GGATG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 187
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 7, 238
BsgI GTGCAG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 143, 503
BshNI GGYRCC 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 3 cut(s) 56, 188, 218
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 152, 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 2 cut(s) 143, 503
Bso31I GGTCTC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 1 cut(s) 270
BspANI GGCC 2 cut(s) 143, 503
BspEI TCCGGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 1 cut(s) 270
BssNI GRCGYC 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 100, 350
BstACI GRCGYC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 299
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 152, 356
BstMBI GATC 1 cut(s) 270
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 17, 223
BstPI GGTNACC 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 7, 238
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 143, 503
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 185, 502
Csp6I GTAC 2 cut(s) 122, 280
CviAII CATG 2 cut(s) 336, 499
CviJI RGCY 8 cut(s) 5, 20, 47, 143, 229, 325, 463, 503
CviKI_1 RGCY 8 cut(s) 5, 20, 47, 143, 229, 325, 463, 503
CviQI GTAC 2 cut(s) 122, 280
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 141
EagI CGGCCG 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 359
EcoT22I ATGCAT 1 cut(s) 341
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 2 cut(s) 339, 502
FaiI YATR 9 cut(s) 90, 134, 254, 302, 337, 384, 386, 474, 500
FaqI GGGAC 1 cut(s) 353
FatI CATG 2 cut(s) 335, 498
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 6, 9, 21, 227
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 4 cut(s) 6, 9, 21, 227
FspBI CTAG 1 cut(s) 291
GluI GCNGC 4 cut(s) 6, 9, 21, 227
HaeIII GGCC 2 cut(s) 143, 503
HapII CCGG 3 cut(s) 56, 188, 218
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 2 cut(s) 339, 502
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 1 cut(s) 307
HpaII CCGG 3 cut(s) 56, 188, 218
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 75, 198
Hpy188I TCNGA 2 cut(s) 262, 451
Hpy188III TCNNGA 2 cut(s) 56, 236
Hpy8I GTNNAC 2 cut(s) 75, 198
Hpy99I CGWCG 3 cut(s) 149, 196, 209
HpyCH4III ACNGT 2 cut(s) 100, 350
HpyCH4IV ACGT 3 cut(s) 194, 204, 298
HpyCH4V TGCA 5 cut(s) 23, 105, 339, 401, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 223
HpySE526I ACGT 3 cut(s) 194, 204, 298
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 339, 502
Kpn2I TCCGGA 1 cut(s) 55
KpnI GGTACC 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 6 cut(s) 69, 168, 201, 231, 249, 441
Lsp1109I GCAGC 2 cut(s) 7, 238
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 291
MaeII ACGT 3 cut(s) 194, 204, 298
MaeIII GTNAC 2 cut(s) 31, 344
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 1 cut(s) 509
MluCI AATT 4 cut(s) 244, 264, 359, 441
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 2 cut(s) 105, 328
Mph1103I ATGCAT 1 cut(s) 341
MroI TCCGGA 1 cut(s) 55
MseI TTAA 1 cut(s) 524
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 3 cut(s) 56, 188, 218
MwoI GCNNNNNNNGC 2 cut(s) 17, 223
NdeII GATC 1 cut(s) 270
NlaIII CATG 2 cut(s) 339, 502
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 341
OliI CACNNNNGTG 1 cut(s) 207
PkrI GCNGC 4 cut(s) 7, 10, 22, 228
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Ppu21I YACGTR 1 cut(s) 299
PspEI GGTNACC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 185, 502
PstI CTGCAG 1 cut(s) 25
RsaI GTAC 2 cut(s) 123, 281
RsaNI GTAC 2 cut(s) 122, 280
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 4 cut(s) 6, 9, 21, 227
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 2 cut(s) 185, 502
SchI GAGTC 1 cut(s) 301
SetI ASST 7 cut(s) 22, 49, 123, 197, 207, 231, 301
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 4 cut(s) 244, 264, 359, 441
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 100, 350
TaiI ACGT 3 cut(s) 197, 207, 301
TaqI TCGA 1 cut(s) 38
TasI AATT 4 cut(s) 244, 264, 359, 441
TatI WGTACW 1 cut(s) 279
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 4 cut(s) 5, 8, 20, 226
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 503
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 3 cut(s) 244, 264, 359
XspI CTAG 1 cut(s) 291
ZraI GACGTC 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.